Acidithiobacillus caldus SM-1: Atc_0010
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Entry
Atc_0010 CDS
T01581
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
acu
Acidithiobacillus caldus SM-1
Brite
KEGG Orthology (KO) [BR:
acu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
acu03032
]
Atc_0010
03400 DNA repair and recombination proteins [BR:
acu03400
]
Atc_0010
Enzymes [BR:
acu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
Atc_0010
DNA replication proteins [BR:
acu03032
]
Prokaryotic type
DNA Topoisomerases
Atc_0010
DNA repair and recombination proteins [BR:
acu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
Atc_0010
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
Zn_ribbon_RPB9
Trm112p
Motif
Other DBs
NCBI-ProteinID:
AEK56661
UniProt:
F9ZT42
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All DBs
Position
complement(11894..14377)
Genome browser
AA seq
827 aa
AA seq
DB search
MGQQLVVVESPAKAKTIEKYLGKDFTVLASYGHVRDLLPKEGAVDTEHGFAMRYAEIERN
RRHVDAIAKALRSADALWLATDPDREGEAISWHLVELLREKGLLKDRAVHRVVFHEITQK
AVREAIAHPREIAGDLVNAQQARRALDYLVGFNLSPLLWRKVRPGLSAGRVQSAALRLVC
EREDEIEAFVRQEYWTIGAHLRRGEDPFTARLTHWQQQKLEQFDIVDGERAEEIRQAILA
DIAAGGLRVRKVERKNRQRQPAAPFTTSTLQQEASRKLGFSASRTMRVAQQLYEGVSIGT
ETVGLITYMRTDAVNLAEEALTSLRSFILGHYGADFLPAEARRYQTKSKNAQEAHEAIRP
TDVQRTPEKLRGVLERDLWRLYDLIWKRAVACQMAAARLDLVAADLDADSHWTLRANGST
VTFPGFMAVYLEGRDEAAEEDEERLLPPLREGESVAVDAVLGEQHFTEPPPRYSDATLVK
TLEAHGIGRPSTYASIIQTLQNREYVEVQQRRFVPTDLGRVVGRFLIQHFERYVDYGFTA
AMEDELDAIARGEKQWQPVLAQFWGPFHELLEEKANVSRQEATSEALDEDCPECGKKLLV
KLGRHGRFIACSGFPECHYARPLDGPRDAPEPVGRDCPDCGQPLVYKTGRYGRFISCSAY
PQCKYIEALNKPKGTGITCPQCKVGELVEKRSRYGKIFYSCDTYPKCSYALWGPPLQRPC
PRCAWPILYQKSTKRRGEELVCPQAECAFHFPAAAEDAEVQRLLADYTPPPPKDDADAAA
RPRRAAKTVKKAAAGPKSAAAAKTVRSKPTSRTANKSKTSKKPTVKA
NT seq
2484 nt
NT seq
+upstream
nt +downstream
nt
atgggtcagcaactcgtcgtcgtcgaatccccggccaaggccaagaccatcgaaaaatac
ctgggcaaggattttacggtgctggcctcctacgggcacgtgcgcgacctgctcccgaag
gagggggccgtggacacggagcatggctttgccatgcgctatgccgagatcgaacggaat
cgacggcacgtcgacgccattgccaaggccctgcgctctgccgacgccctgtggctggcg
acggaccccgatcgcgagggtgaggccatttcctggcacctggtggaactcctccgggaa
aagggcctgctgaaagaccgggcggtgcaccgcgtggtcttccacgagatcacccagaag
gcggtgcgggaagccatcgcccacccgcgggagatcgcgggtgatctcgtcaatgcccag
caggcccgccgtgccctggactatctcgtgggtttcaatctatcgccgctgctctggcgc
aaggtccgtccgggcctgtcggccggacgcgtccagagcgccgccctgcgcctggtctgc
gagcgcgaggacgagatcgaggccttcgtccgtcaggaatactggaccattggcgcacac
ctgcggcgcggcgaagacccctttacggcgcgcctgacccactggcagcagcaaaagctg
gagcagttcgacatcgtcgatggcgagcgggcggaggaaatacggcaagccatcctggcg
gacatcgccgccggcggtctgcgtgtgcgcaaggtcgagcgcaagaatcggcagcgtcag
cccgcggcgcccttcactacctccaccctgcagcaggaggcctcacgcaaactgggcttc
agcgccagccgtaccatgcgcgtggcgcaacaactctacgagggtgtgagcatcggcacg
gaaacggtgggcctcatcacctacatgcgtaccgatgccgtcaatctggccgaagaggcg
ctcacctccctgcgcagcttcatccttggtcactacggggcggatttcctcccggccgag
gcgcgccgctaccagaccaaaagcaagaacgcccaggaggcccacgaggccattcgaccg
acggatgtgcagcgcactcccgagaagctccggggggtgctggagcgcgatctgtggcga
ctctacgacctcatctggaagcgcgccgtagcctgccagatggcggcggcgcgtctggat
ctcgtggccgccgacctggacgccgacagccactggaccttgcgcgccaacggctcgacg
gtgacctttcccggcttcatggccgtctacctggagggtcgtgatgaggcggcggaggag
gacgaggagcgcctgctgccgcccctgcgcgagggcgagagcgttgccgtggacgcggtg
ctgggcgaacagcacttcacggaaccaccgccgcgctacagcgacgccactttggtgaag
actctggaggcccacggtatcggccgcccctccacctacgccagcatcattcagaccctg
cagaaccgcgaatacgtcgaggtccagcagcgtcgctttgtccccaccgatctcgggcgc
gtcgtgggacgcttcctgattcagcacttcgaacgctacgtggattacggtttcaccgcc
gcaatggaagacgaactggacgccattgcccggggtgagaagcagtggcagccggtactc
gcacagttctggggccccttccacgagcttttggaagaaaaggccaacgtcagtcgacag
gaagcaaccagcgaggcgctggatgaggattgtccagaatgcggcaaaaagcttctggta
aaactcggtcggcacggacgtttcatcgcctgttccggctttcccgagtgccactatgcc
cgccccctggatgggccccgggacgctccggaacccgtcggtcgcgattgccccgactgt
ggccagcccctggtctacaagaccgggcgctacgggcgcttcatctcctgtagtgcctat
ccccagtgcaaatacatcgaggctctgaacaagcccaagggcacgggcatcacctgcccc
cagtgcaaggtcggtgagttggtggaaaaacgcagccgctacggcaagatcttctactcc
tgcgatacctatcccaaatgcagctacgccctctggggcccgccgctgcaacggccctgt
ccccgctgcgcttggcccatcctctaccaaaaaagtaccaaacggcgcggggaagaactg
gtctgtccccaagccgagtgcgccttccactttcccgccgcagccgaagatgccgaagtg
cagcggcttctcgcggactacactccgccgccgcccaaggacgacgccgatgccgcggcg
cgcccacggcgcgctgccaagaccgtcaagaaggcggcagctggccccaaatccgccgcc
gcggctaaaaccgtccggtcgaagccgaccagcagaaccgccaacaagagcaaaacctcc
aagaaacccaccgtcaaagcgtga
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