Acidithiobacillus caldus SM-1: Atc_0056
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Entry
Atc_0056 CDS
T01581
Name
(GenBank) ATP-dependent DNA helicase UvrD/PcrA
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
acu
Acidithiobacillus caldus SM-1
Pathway
acu03420
Nucleotide excision repair
acu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
acu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Atc_0056
03430 Mismatch repair
Atc_0056
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
acu03400
]
Atc_0056
Enzymes [BR:
acu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Atc_0056
DNA repair and recombination proteins [BR:
acu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Atc_0056
MMR (mismatch excision repair)
Other MMR factors
Atc_0056
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
Viral_helicase1
AAA_11
PcrA_UvrD_tudor
Motif
Other DBs
NCBI-ProteinID:
AEK56707
UniProt:
F9ZTA1
LinkDB
All DBs
Position
61928..64075
Genome browser
AA seq
715 aa
AA seq
DB search
MSEWIQLNDQQREAVLLPPGPALVLAGAGSGKTRVLISRIAHLLEEGVRPAEILAVTFTN
KAARSMRERLAALVQVDLAPLWMGTFHGIAHRLLRRHAEALGLPADFQVLDSDDSQRLVR
RALRELGLDEKQWTPRALAAQIGRWKDEGWTPAQVPAREVGRWTIPVQVYERYERIKERG
GLVDFADLLLYALRLWDQDGILEHYRERFQHVLVDEFQDTNAVQYTWLRRLAAHGRLFVV
GDDDQSIYAWRGARVENLLRFAEDFPGAALVRLEQNYRSSAPILAAANAVIAHNAERLGK
TLWTAQDGGEPLELYAAYNEEDEARFVVAQIQQWVAQGGRREDCAILYRSNAQSRVFEEI
LVREGVPYRVYGGLRFFERAEIKDVLAYLRLCRNRHDDASFERVVNLPTRGIGNVTLERL
RLQAREQGLSLWQAAGQAASPKLNAFLTLVDGLAAEIAGDELDAAVQRVIEVTGLRDWYA
RDGDRNEGRLENLDELINAARAYAFVEEREALRELNPDPGNRLSEFLTHAALEAGEGASD
AWEDAVQLMSLHSAKGLEFPVVFLVGLEEGLFPHQRSLEDADGLAEERRLCYVGMTRAMR
RLVLCYAESRRLHGSERASLPSRFLRDLPSDLVRELRPRARIRRPVVPTATLSPRQGSAA
RDLPYPLGSRIRHPVFGEGTVLDYEASGRQGRIQVRFASGAKWLALGVVALEHLS
NT seq
2148 nt
NT seq
+upstream
nt +downstream
nt
gtgagtgaatggatacaactcaacgatcaacagcgtgaggctgtgctcctaccgcctggc
cctgccctggtgctggcaggggcgggctcgggcaagacccgcgtactcatcagccgcatc
gcccatctgttggaggagggggtgcgtccggcagagatcctggccgtaacttttaccaac
aaggcggcgcggtccatgcgcgagcgtctggcggccctggtgcaggtggatctcgcgccg
ctgtggatgggtaccttccacggtattgctcaccgcttgttgcgccgccacgccgaggcc
cttggtctgcccgccgattttcaggtcctcgatagcgacgacagccaacgcctggtgcgc
cgcgccctgcgcgagctgggtctggatgagaagcagtggacaccccgggcgctggcggca
cagatcggtcgctggaaggacgagggctggacgccggcgcaggtgccggcgcgggaggtc
ggtcgctggacgatcccggtgcaggtctacgaacgctatgagcgcatcaaggaacgcggc
ggcctggtagatttcgccgacttgctcctgtatgccctgcgtctgtgggatcaggacggc
atcctcgagcactatcgcgaacgttttcagcatgtgctcgtggacgagttccaggacacc
aacgccgtgcaatacacctggctccggcgcctggccgcgcacggacggcttttcgtggtg
ggggatgacgatcagtccatctatgcctggcgcggggccagggtcgagaatctgctgcgc
ttcgccgaggattttcctggtgcggcgctggtgcgtctggagcaaaactatcgttccagt
gcgcccattctggccgctgccaacgcggtcatcgcccacaacgccgagcgcctgggcaag
accctgtggacggcacaggatggtggggagcccctggagctctacgcggcctacaatgag
gaggacgaagcccgctttgtcgtcgcccagatccagcagtgggtcgcgcagggtgggcgt
cgtgaggattgtgccattctgtaccgttccaacgcccagtctcgggtcttcgaggaaatc
ctggtgcgcgaaggcgtgccctatcgggtctacggcgggctgcgttttttcgaacgggcg
gaaatcaaggacgtgctcgcctatctgcggctgtgccgcaaccggcacgacgatgcgtcc
ttcgagcgggtggtcaatctgcctacccggggaattggcaatgtcaccctggagcgcctg
cgcctgcaggcccgggagcagggtctatccctgtggcaggcagcggggcaggccgcttcg
cccaagctgaacgccttcctgaccctggtggacggcctcgccgccgagattgccggcgac
gaactggacgccgcggtgcagcgggtgatcgaggtgacgggcctgcgcgactggtacgca
cgcgatggcgaccgcaatgagggccgcctggaaaatctggacgaactcatcaacgccgcg
cgtgcctatgcctttgtggaggagcgtgaggcgctgcgggagctcaatcccgaccccggc
aatcgtttgtcggagtttctcacccacgcggctctggaggccggcgagggtgccagcgat
gcctgggaggatgcggtccagttgatgagtctgcacagcgccaagggcctggagttcccc
gtggtttttctggtgggtctggaagagggcctgtttccgcaccagcgctcgctggaggat
gccgatgggctcgccgaggagcgcaggctgtgttacgtcggcatgacgcgcgccatgcgc
cgactggtgctctgctacgccgagagcagacgtctgcacgggtcggagcgtgccagtctg
ccctcccggtttctgcgcgacctgcccagcgatctcgtccgcgagctgcggccgcgggca
cgcatccgccgccccgtggtgccgacggcgacgttgtcgccccggcagggcagcgccgca
cgggacttaccctatcctttgggcagccgtatccggcacccggtgttcggcgagggtacg
gtattggattacgaggcttccggtcgtcagggacggatccaggtgcgttttgcctccggg
gccaagtggctggccctgggtgtggtggccctggagcacctctcctga
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