Acidithiobacillus caldus SM-1: Atc_0257
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Entry
Atc_0257 CDS
T01581
Name
(GenBank) Exodeoxyribonuclease V gamma chain
KO
K03583
exodeoxyribonuclease V gamma subunit [EC:
3.1.11.5
]
Organism
acu
Acidithiobacillus caldus SM-1
Pathway
acu03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
acu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
Atc_0257
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
acu03400
]
Atc_0257
Enzymes [BR:
acu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
Atc_0257
DNA repair and recombination proteins [BR:
acu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
Atc_0257
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_V_gamma
RecC_C
Motif
Other DBs
NCBI-ProteinID:
AEK56908
UniProt:
F9ZQ71
LinkDB
All DBs
Position
complement(273466..276906)
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AA seq
1146 aa
AA seq
DB search
MSGLPRPGVVVLHGDRLEDLLTAIRQWLGANPLPPLVEDTFLVQSNAVGEWLQWQLAEGD
GICAGIRVSLPARFLWESYRRVLGPRGVPDDTVWSKAALRWRLLRLLPRLAHEADPGGAP
LLRYLATTDSSALERRWRLAGLLADLLDQYQVYRADWLKDWAAGRWTLRDGRGVLRDLPQ
DQRWQAQLWQWLCREVTEGGSHFAGRGEIHEAFLQRLREAAPGSLDLPPRLIFFGAVSLP
AQSLEALAALGRHLQVLMAIPNPSAYHWSDVAGADEDLRRQRRRRVLGTSEAGFGPRLLA
AWGRQGRDFMRLLDRFDESVEMGPLWGLQRVDFFTEDTGTTLLRQLQTRIRDLVDSREPG
RTLAENDDSLVLHSSYGPLRELQVLQDELLLRLGRGRGLRPRDIVVMVPDIASYAPLVQA
VFGVYGKNDPRYIPFHIVDLTPQERSNLIRVLVWLLGLPQSRVTQSEIRDLLDCSALQRR
FGLAAEDLPQIHTWLEQGGWRWGLSAAHRADLGFAACGAPTSGAFALQSLLLGYTNGSDS
HFDGIEACAEVGSLDAALLGKLWVLWERLESWRERLKEATTPEHWVERARQLLADFFVAS
DTADREALEQLESALEDWLLQTEKAAWDGPLPLEIFREAWLDGLESAGDGAFLGGGVTFC
TLMPMRSIPFRMVCLLGMNDEDYPRPDPRRDFDLMTLPDMARPGDRSRREDDRYLMLEAL
LSARDGLYLSWTGRDPRNQENRAPSALILQLQREIVGIWGEDALRTRLHLDPLQPFSPRY
LEPDGPESFAREWFPVSAVEDRSVAVLSPPAARLELALLDLKGALSDALASFYALRLGVE
SPWRDRMAADDEAFRLDGLGQWQILQQLWERAASPAELREGLAAEARRGHLPLAAAGILQ
QQRLLTLMESLLGSWQAVAEALGPEHEVLEDEFLGDGFRLQAKLPKDRSWNANPLGIHLR
RHTSKLWHGGKARADRLLLWWLELTVLQTKRREGAVLGLFLGQDGWLCAPAPVAADESLT
ELLAWLGEALREPHPLSLDWALALLADAERGDGAGSRRHILGDGLGAAGAWRENWLLQRH
FPNPEAVLEWRSSAGLSALDLARRIYEPYRRWLAAVQPLADGLELSGPQLLQRAVDSVSS
LREAAQ
NT seq
3441 nt
NT seq
+upstream
nt +downstream
nt
gtgagtgggcttccccggcccggcgtcgtggtgctgcacggcgatcgcctggaggatctg
ctcacggccatacgtcagtggctcggggccaatccgctgccgcccctggtggaggacacc
tttctcgtgcagagcaatgccgtgggcgaatggctgcaatggcagctggccgagggcgat
gggatctgtgccgggatccgggtcagcctgcccgcccgttttttatgggaaagttaccgt
cgggtgctgggaccccgtggcgtgcccgacgacaccgtctggagcaaggcggcgctgcgc
tggcgcctgctgcggctcttgccgagactcgcgcacgaagcggaccccggcggcgcacca
ctgttgcgttatctggccaccacggattcctccgccctggagcggcgctggcgcctggcg
ggccttctggcagatctcctggatcagtatcaggtctatcgtgccgactggctgaaggat
tgggccgcaggccgctggaccctgcgcgacggacgcggcgtcctgcgtgatctgccgcag
gaccagcgctggcaggcccagctctggcagtggctctgccgcgaggtgacggagggaggc
agccacttcgctggccgcggggagatccacgaggcgtttctgcagcgcctgcgggaagcc
gctcctggctctctggatctgccgccccgactcatcttcttcggtgccgtcagcctgcca
gcccagagcctggaggccctggctgcccttgggaggcacctgcaggtgctcatggccatc
cccaatcccagcgcgtatcactggagcgatgtcgccggggccgatgaggatctgcgtcgg
cagcgccggcgccgtgtcctcggcacctcggaagcgggtttcggcccgcgccttctggca
gcctggggacgtcagggacgcgatttcatgcgccttctggatcgtttcgacgagagcgtg
gagatgggtccgctctggggcctgcaacgggtggacttcttcaccgaggataccggcacc
accctgctgcggcagctgcagacccgtatccgcgatctcgtggacagccgggagcccggc
agaaccctggccgagaacgacgactccctggtcctgcacagcagttatggccctctgcgc
gagctccaagtactgcaggatgagctcttgctgcgccttggccgtggtcgtggtctgcgg
ccacgggacatcgtggtcatggtgccggacatagcctcctatgcgcctttggttcaggcg
gtgttcggcgtctatggaaagaacgacccgcgctatattccgtttcatatcgtcgacctc
accccgcaggagcgctcaaacctgatccgcgtcctggtctggctgctgggtctgccccaa
agccgcgtcacccagagcgagatccgcgacctcctggactgcagcgccctgcagcgacgc
tttggccttgcggcggaggatctgccccaaatccatacctggctggaacagggaggctgg
cgctgggggctgtcggcggcgcaccgagccgatctgggttttgccgcctgcggcgctccc
accagcggcgccttcgcactccagagtctactgctgggctacaccaacggcagcgacagt
cacttcgacggcatcgaggcctgcgccgaggtgggcagcctggatgccgccctcctcggc
aaactctgggtgctctgggagcggctggaatcctggcgcgaacgcctgaaggaggcgacg
accccggagcattgggtggagcgggcgcgccagctccttgccgatttttttgtggccagc
gatacggcggaccgtgaggccctcgagcaactggaaagtgccctggaggactggctgctg
caaaccgagaaggccgcctgggacgggcctctacctctggagatcttccgcgaggcctgg
ctcgacggcctcgagtccgcgggggatggcgccttcctgggcggcggcgttaccttctgc
accctgatgcccatgcgctccattcccttccgcatggtctgtctgctgggcatgaacgat
gaggactatccgcgtcccgatccgcgacgcgacttcgatctcatgaccctgcccgacatg
gcccgccccggcgatcgctcgcgccgcgaggacgatcgctatctcatgctggaggcattg
ctctctgcccgggatggtctctacctcagctggaccggccgcgatccgcgcaatcaggaa
aaccgcgctccctcggccctcatcctgcaactgcagcgcgagatcgtcggcatctggggc
gaagacgccctgcgcacgcgtttgcacctggaccccctgcagcctttcagcccccgctat
ctggagcccgatggcccagagagctttgcccgcgagtggttccccgtgtccgccgtggag
gaccgaagcgtggctgtcctttcgcctcccgctgcccgcctggagctcgctttgttggac
ctgaaaggtgccctgtccgacgcactggcgagcttctacgccctgcgcctgggcgtcgag
tcgccgtggcgcgacaggatggcagcggacgacgaagccttccggctggacggactcgga
cagtggcagatcttgcagcagctctgggagcgcgcggcgagccccgcggagctgcgcgag
ggtcttgcggccgaggcgcgacgggggcacctacccctggccgccgccggaatactgcag
cagcagcggctgctgaccctcatggaatccctcttgggcagctggcaggccgtagccgaa
gcactgggtcccgagcacgaagtgctggaggacgaatttctgggcgatggctttcgcctc
caagccaagctgcccaaagatcgctcctggaacgccaatccgctgggcatccacctgcgt
cgccacaccagcaagttgtggcatgggggcaaggcccgggcagatcgcctgctgctgtgg
tggctggagctcacggtgctgcaaaccaagcgacgggagggcgcggtgctcggcctcttc
ctcggtcaggacggctggctctgtgcgccggcgccagtggcagccgacgaatccctgacg
gaactcctggcgtggctgggagaagccctgcgcgagccacatcccctcagtctggactgg
gccctcgccctattggcggatgccgagcgtggcgacggcgccggcagtcgtcgccacatc
cttggcgacggccttggtgcagccggtgcctggcgtgagaactggttgctgcaacgccac
tttcccaacccggaggcggtgctggaatggcgcagcagcgccggactatcggctctggat
ctggcgcgcaggatctacgaaccctaccgtcggtggctggcagcggtccagcccctggcg
gatgggctggaactgtcgggcccgcagctgctgcagcgggcggtggacagcgtgagcagc
ctccgcgaggcggcgcaatga
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