Acidithiobacillus caldus SM-1: Atc_0372
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Entry
Atc_0372 CDS
T01581
Name
(GenBank) RNA polymerase sigma-54 factor RpoN
KO
K03092
RNA polymerase sigma-54 factor
Organism
acu
Acidithiobacillus caldus SM-1
Pathway
acu02020
Two-component system
acu02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
acu00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
Atc_0372
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Atc_0372
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
acu03021
]
Atc_0372
Transcription machinery [BR:
acu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Atc_0372
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_IclR
LacI
DUF3253
Motif
Other DBs
NCBI-ProteinID:
AEK57023
UniProt:
F9ZSS5
LinkDB
All DBs
Position
387314..388747
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AA seq
477 aa
AA seq
DB search
MKPGLELKLGQHLTMTPQLQQAIRLLQLSTLDLRQEVQSMLESNPLLDEDVEEGNEPAEA
LEPRSETHADERQLDLDADDALPNELPVDSQWDDIYDLGNTPSAGPPPDDDLPDFEARNS
RSQSLQDYLRWQADLSHFSVQERNIAEVIIDAVDDSGYLAASIEELAATLELAPADVTPV
LRRVQDFDPPGVAARDLGECLSLQLRQLPQPDLPVVTLARRIVEAHLDLLGKHDYGRLGQ
LLNADPETLRQAVALIASLNPKPGSTVGDDSAEYVIPDVIVRWRGRQLRVELNPEAMPRL
RINRHYAEMASARDAAHRYIQDQLSEARWFIKSLQSRQETVLKVASAIVERQQDFFRHGP
ESMRPMVLRDIAEAVEMHESTVSRVTNQKYMITPRGLFEFKYFFSSHVNTDSGGAASATA
IRALIVKFVQAEDPQHPLSDAEIAKILADQGVQIARRTVAKYREAANIPPASQRRRL
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
atgaagccaggactcgaactcaagctcggtcagcatctgaccatgaccccccagctgcag
caggccatacgcctgttacagctgtccactctcgacctgcgccaggaagtgcagagcatg
ctggagagcaatccgctgctggatgaggatgtggaagaggggaacgagcctgcagaggcg
ctggagccgcgtagcgaaacccacgccgacgagcgccagctggatctcgatgccgacgac
gcgctacccaacgagcttccggtggacagccagtgggacgacatctacgacctcggtaat
accccctcggcgggcccgccccccgacgacgatctgcccgatttcgaggcgcgtaacagt
cgctctcagtctctgcaggattatctgcgctggcaggcggacctcagccatttcagcgtt
caggagcgcaatatcgccgaggtgatcatcgacgccgtggacgacagcggctatctggcg
gccagcatcgaagagctggcggcgacgctggagctggcgccggcagacgttacgccggtg
ctgcgccgggtccaggacttcgaccccccgggagtggcggcacgggatctcggcgagtgt
ctgtccctacagttgcgccagttgccgcagccggatctgcccgtggtcaccctggcgcgg
cgcatcgtcgaagcgcacctggaccttctgggcaaacacgattacggccgtttgggccag
ctcctgaatgccgatcccgaaaccctgcgccaggcggtggcgctcatcgcgagcctcaac
cctaagccgggcagcacggtgggcgacgattcggccgaatacgtcatccccgatgtcatc
gtgcgctggcggggtcgacaactgcgcgtcgaactgaatccggaggccatgccgcgcctg
cgcatcaatcgccattatgccgagatggccagcgcccgcgatgccgcgcatcgctacatc
caggaccagctcagtgaagcgcgctggttcatcaagagcttgcagagtcgccaggagacg
gtactcaaggtggccagcgccatcgtcgaacgccagcaggacttcttccggcacgggccc
gaatccatgcggcccatggtgctgcgcgacattgccgaggcagtggagatgcacgagtcc
acggtatcgcgggtcaccaaccagaaatacatgatcaccccgcgcgggcttttcgagttc
aagtacttcttttcgagtcacgtgaataccgatagcggcggagcagcctccgccaccgcc
attcgcgccctcatcgtcaagttcgtgcaggcggaggacccgcagcaccccctgagcgac
gccgagatcgccaagatcctggcagatcaaggggtgcagattgcccgccgtaccgtggcc
aagtaccgggaagcggccaatatccctccggccagccagagacggcggctctga
DBGET
integrated database retrieval system
