Acidithiobacillus caldus SM-1: Atc_0468
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Entry
Atc_0468 CDS
T01581
Name
(GenBank) Formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
acu
Acidithiobacillus caldus SM-1
Pathway
acu03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
acu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Atc_0468
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
acu03400
]
Atc_0468
Enzymes [BR:
acu01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
Atc_0468
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
Atc_0468
DNA repair and recombination proteins [BR:
acu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
Atc_0468
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
DUF5351
Motif
Other DBs
NCBI-ProteinID:
AEK57118
UniProt:
F9ZT13
LinkDB
All DBs
Position
480508..481320
Genome browser
AA seq
270 aa
AA seq
DB search
MPELPEVEVTRLALAPHLEGQTLTGAVVRQKKLRQWVPPDLDSRLRGRVLNRLDRRGKYL
LADFVHGQLLLHLGMSGSLRLLPQDMAATVHDHVDILLGDGRCLRFRDPRRFGLILWNTE
GAAHPLLRDLGPEPLAENFSGQVLYRRSRGRQQAVKSFLMDSHTVVGVGNIYATESLFRA
GIDPRRAAGRISAARYDDLAMVIRTVLREAIAQGGTTLRDFFQPDGGNGYFRLSLQAYGR
EGEPCIRCGGTLRGQRLGGRATVFCPYCQH
NT seq
813 nt
NT seq
+upstream
nt +downstream
nt
atgccggaattgcctgaggtggaggtcacccgcctggccctcgcgccccacctggaggga
cagaccctgaccggcgcggtggtgcgccagaaaaagctgcgccagtgggtgcccccggat
ctcgatagccggttacggggacgcgtgctgaaccgcctggatcggcgcggcaagtatctg
ctggcggattttgtccacggccagctcctgctgcatctggggatgagcggtagtttgcgc
ctgctgcctcaggacatggcagcaacggtccacgatcacgtcgatatcctcctcggcgat
ggtcgctgtctgcgctttcgcgatccccggcgttttggcctgatcctgtggaataccgag
ggtgcagcccacccactgctgcgggacctggggccggagccgctggcggaaaatttttcc
ggccaagtgctgtatcggcgcagtcgcggccggcaacaggcggtcaagagcttcctcatg
gacagccacacggtggtgggcgtcggtaacatctacgctaccgaaagcctgttccgggcg
gggatcgacccgcgtcgagcagcaggccgcatctctgcggcacgctacgacgatctcgca
atggtcattcgcacggtgctgcgtgaggccatcgcccaaggcggtacgaccttgcgcgac
tttttccagcccgatggcggtaacggctattttcgactatctctacaggcctacggcaga
gagggggagccctgcatacgctgtggtgggactctgcgcggccagcgtctcggcggacgt
gccacggtcttttgtccgtactgtcaacattag
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