Acidithiobacillus caldus SM-1: Atc_0498
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Entry
Atc_0498 CDS
T01581
Name
(GenBank) Cold-shock DEAD-box protein A
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
acu
Acidithiobacillus caldus SM-1
Pathway
acu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
acu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Atc_0498
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acu03019
]
Atc_0498
03009 Ribosome biogenesis [BR:
acu03009
]
Atc_0498
Enzymes [BR:
acu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Atc_0498
Messenger RNA biogenesis [BR:
acu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Atc_0498
Ribosome biogenesis [BR:
acu03009
]
Prokaryotic type
rRNA helicases
Atc_0498
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_19
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AEK57148
UniProt:
F9ZT10
LinkDB
All DBs
Position
512718..514556
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AA seq
612 aa
AA seq
DB search
MGTETALSFSDFALAEPLQRAVREIGYEQPSPIQAQSIPPLLAGRDVIGLAQTGTGKTAA
FALPLLSRVDLSLRFPQILVLAPTRELAIQVAEAMQSYAKFLPGFHVLPIYGGQSMGLQL
KQLQRGVQVVVGTPGRIQDHLRRETLKLDRLQAVVLDEADEMLRMGFIDAVEDILKHTPA
QRQVALFSATMPEAIRRIARTYLRDPLEIRIKSTTSTVAAIRQRYWLVSGTHKLDALTRI
LEVEDSNAWIIFVRTKTATVELAERLEARGYACGALNGDMTQAMREQTIERVKSGSLDIV
VATDVAARGLDVERITHVINYDIPNDTEAYVHRIGRTGRAGRKGEAILFVAPRERYLLKA
IERATGQPIEPMHLPSLEDVADRRTSQFKEQLTTVLETEDLDRFASLVAEYQSEQEVSLE
RIAAALAFLAQRDRPLVPDAPPAVPSLDKAPGPRGARRLEERKERAPRERAAAGENRPDD
TPMILYRLAVGESHGAQVKNIVGAIANESGLPSRLIRKVQVHDDYSTVELPADLDRGILE
HLQKVWVAGRPLQIAVVGTAERARTSSTRRSVSPKADARPVLSVRKSTPEDGRTDGREVK
KPSRRKQERDKR
NT seq
1839 nt
NT seq
+upstream
nt +downstream
nt
atgggtaccgagactgcgctgagtttttccgattttgccttggccgagcccctgcagcgg
gcagtgcgagagattggctacgagcaaccctctcccatccaggcgcagagcattccgccg
ctcctggctgggcgcgatgtcatcggccttgcccagaccggcaccggcaagactgccgcc
tttgcgctgccgctcctcagccgggtggatctgtccctgcgcttccctcagattctggtg
ctggcccccacgcgcgagctggccatccaggttgccgaggccatgcagagctacgccaag
tttctgcccggttttcacgtcctgcccatctacggcggtcagtccatgggtctgcagctc
aagcagctgcagcgcggagtgcaggtggtcgtgggcacacccgggcgtatccaggaccat
ctgcgccgtgagactttgaagctcgatcgcctgcaggcggtggttctcgatgaggccgac
gagatgttgcgcatgggtttcatcgacgctgtggaagacatcctcaaacacacgccggca
cagcgccaggtggcccttttctcggccaccatgcccgaggccatccgccgcatcgcccgt
acctacctgcgcgaccctctggaaatccgcatcaagagtaccaccagcaccgtggcagcc
attcgccagcgctactggctggtgagcggtacccacaagctcgatgcccttacccgtatt
ctcgaggtggaggacagcaacgcctggatcatttttgtgcggaccaaaaccgccacggta
gagctggcggaacgcctcgaggcgcgcggttatgcctgcggtgccctcaatggcgacatg
acccaggccatgcgcgagcagaccatcgagcgggtcaaatccggtagcctcgatatcgtc
gtcgccaccgatgtggccgcccgcggactggatgtggagcggatcacccacgtcatcaac
tacgatattcccaacgatacggaagcctacgtccaccgcatcggacgcacggggcgtgcc
gggcgcaagggtgaagccattctcttcgtggcgccgcgcgagcgttacctcttgaaggcc
atcgaaagggccacgggccagcccatcgagcccatgcatctgccgagtctggaggacgtg
gcggatcggcgcacgagccagttcaaggaacaactgaccaccgtcctggaaacggaagac
ctggatcgcttcgcgtccttggtggcggaataccagagcgagcaggaggtatccttggag
cgcattgccgccgccctcgcttttctggcccagcgcgacaggccgctggtgcccgatgcg
ccgcccgccgtaccgagtctcgacaaggcccctggcccgcgtggtgcgcgtcgcctggaa
gagcgcaaggaaagggcacccagagagcgggctgcggcgggagaaaaccgtccagacgat
acgcccatgatcctctatcgccttgccgtgggggagagccatggggcgcaggtcaagaac
atcgtcggcgccattgccaatgaatcgggactgcccagtcgcctgatccgcaaggtccag
gtacacgacgattacagcacggttgagctaccggcggacttggatcgcggtattctggag
cacttgcagaaggtctgggtggcgggacgtcctctgcagattgccgtcgtcggtacggca
gagcgggcacggacctcgtcgaccaggcgcagcgttagcccaaaggccgatgcaagaccc
gtgttgtcggtgcgcaagagcacccctgaagatggcaggacggacggcagggaggtcaaa
aaaccttcgcggcgcaagcaggagcgggacaagcgctga
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