Acidithiobacillus caldus SM-1: Atc_0673
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Entry
Atc_0673 CDS
T01581
Name
(GenBank) Oligoribonuclease
KO
K13288
oligoribonuclease [EC:3.1.-.-]
Organism
acu
Acidithiobacillus caldus SM-1
Pathway
acu03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
acu00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
Atc_0673
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acu03019
]
Atc_0673
03009 Ribosome biogenesis [BR:
acu03009
]
Atc_0673
Messenger RNA biogenesis [BR:
acu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Atc_0673
Ribosome biogenesis [BR:
acu03009
]
Eukaryotic type
Pre-60S particles
RNases
Atc_0673
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
Rv2179c-like
bAvd
Motif
Other DBs
NCBI-ProteinID:
AEK57322
UniProt:
F9ZML8
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All DBs
Position
complement(668741..669343)
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AA seq
200 aa
AA seq
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MDPKTQRLVWIDLEMTGLNPERDQILEIASIVTDNELRVLSEGPVLAVHQSEAVLAAMDD
WNQRTHGNSGLVQRVRESRLDLGAVEAQTLDFLQAHVQPGTAPLCGNSVCQDRRFLARLM
PRLERFLHYRLIDVSTIKELAYRWYPSLPRYPKTERHEALADIRESIGELQYYRERLFPE
RPFVARTMGGFGEADDAELP
NT seq
603 nt
NT seq
+upstream
nt +downstream
nt
atggatccgaaaacacagcgcctggtctggatcgatctcgagatgacgggtctgaacccg
gagcgggaccagatactagagattgccagcatcgtcaccgacaatgagcttcgggttctt
agcgaagggccggttctggcggtccatcagagcgaggcggtgctcgccgccatggacgac
tggaatcagcgtacccacgggaactccggcctcgttcagcgggtgcgtgaaagtcgcctc
gacctcggcgccgtggaggcccagaccctggacttcctgcaagcccacgttcagccgggt
acggcgccgctgtgcggcaatagcgtctgtcaggatcggcgtttcctagctcgcctcatg
cctcgtctcgagcgctttctccactaccgcctcatcgacgtcagtaccatcaaggagcta
gcctaccgctggtatcccagcctaccacgctatcccaagaccgagcgtcacgaggccctg
gccgatatccgcgaatccatcggcgaactgcagtactaccgcgagcggctgtttccggaa
cgccccttcgtggccagaacgatgggaggttttggggaggcggacgacgccgaactgcct
tga
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