Acidithiobacillus caldus SM-1: Atc_0812
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Entry
Atc_0812 CDS
T01581
Name
(GenBank) Transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
acu
Acidithiobacillus caldus SM-1
Pathway
acu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
acu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Atc_0812
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
acu03021
]
Atc_0812
03019 Messenger RNA biogenesis [BR:
acu03019
]
Atc_0812
Transcription machinery [BR:
acu03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
Atc_0812
Messenger RNA biogenesis [BR:
acu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Atc_0812
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
AAA_25
S1CSD-TOTE-2
OB_RNB
NACHT
AAA_22
AAA
AAA_16
Motif
Other DBs
NCBI-ProteinID:
AEK57461
UniProt:
F9ZLX9
LinkDB
All DBs
Position
818784..820154
Genome browser
AA seq
456 aa
AA seq
DB search
MNTPRPRRKAPRAPKSFPNEDILVEEEEAFLPAPGAKTMNLSELKRKSAAELAVICQDMG
LDGTSRLKKQEIIFNILKAHARNGDAIYGDGVLEILQDGFGFLRAASGSYMAGPDDIYVS
PSQVRRFHLQTGDTVSGQIRPPKEGERYFALLKVESINFEGPDATRNKVNFDDLTPLFPE
ERLRLESDNIPYGEVAPRIIDLVSPIGKGQRGLIVAPPKTGKTVLLQQVAHAITANHPEC
YLIVLLIDERPEEVTEMQRSVKGEVVSSTFDEPATRHVQVAEIVLEKAKRLVEHKHDVVI
LLDSITRLARAYNTVVPSSGKVLTGGVDANALQKPKRFFGAARNIEEGGSLTIIATALVE
TGSKMDEVIFEEFKGTGNMEVHLDRRLAEKRTYPAININKSGTRREELLVPADILSKMWI
LRKLLAPMDPLESMEFLLDKVKATKNNAEFYDSMNR
NT seq
1371 nt
NT seq
+upstream
nt +downstream
nt
ttgaatacgccgcgtccccgccgcaaggcgccccgtgcgcccaagtcctttcccaatgaa
gatatcctcgtagaagaagaggaagcctttctccccgcccccggggccaagaccatgaat
ctgagcgagctcaagcggaagtctgcggccgagctcgcggtgatctgtcaggacatgggt
ctggatggcacctcgaggctcaagaagcaagagatcatcttcaatatcctcaaggcccac
gcccgcaatggcgacgccatctacggcgatggggtgctggagatactccaggacggtttc
ggcttcctgcgcgcggcgtccggctcctacatggccgggcccgatgacatctacgtatca
ccttcccaggtgcggcgtttccatctgcagacgggcgacacggtgtcgggacagatccgc
ccgcccaaggagggcgagcggtattttgccctcctgaaggtggagagcatcaacttcgag
ggccccgatgccacccgcaacaaggtcaatttcgatgacctgacgccgctctttccagag
gagcggctgcgcctggagtccgacaacattccctatggcgaggtggcgccgcgcatcatc
gatctcgtctcgcccatcggtaaagggcagcgcggtctcatcgtcgctccacccaagacc
ggcaagaccgtgctcctgcagcaggtggcgcacgccatcaccgccaatcatccggagtgc
taccttatcgttctgctcatcgacgagcggcccgaggaggtcaccgagatgcagcgctcc
gtcaagggtgaggtcgtctcctccaccttcgacgagccagccacccgccacgtccaggtg
gcggagatcgtcctcgaaaaggccaagcgtctggtcgagcacaagcacgatgtggtcatt
ctgctggattccatcacccgccttgcgcgggcgtacaacaccgtcgtgccgtcctcgggc
aaggtcctcacgggcggcgtggatgccaacgccttgcaaaagcccaagcgcttttttggg
gcggcgcgcaacatcgaggagggtggtagcctgaccatcatcgcgacggccctggtggag
acgggctcgaagatggatgaggtgatcttcgaggaattcaagggcaccggcaacatggag
gtgcatctggatcggcgtctggccgagaagcgcacctatccggccatcaatatcaacaaa
tccggaacccgccgcgaagagctgctggtccccgccgacatcctcagcaagatgtggatc
ttgcgcaaactcctggcacccatggatcctctggagtctatggagtttctgctggacaag
gtcaaggcgaccaagaacaatgccgagttttacgactccatgaatcgctga
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