Acidithiobacillus caldus SM-1: Atc_0858
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Entry
Atc_0858 CDS
T01581
Name
(GenBank) DNA polymerase III alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
acu
Acidithiobacillus caldus SM-1
Pathway
acu03030
DNA replication
acu03430
Mismatch repair
acu03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
acu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Atc_0858
03430 Mismatch repair
Atc_0858
03440 Homologous recombination
Atc_0858
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
acu03032
]
Atc_0858
03400 DNA repair and recombination proteins [BR:
acu03400
]
Atc_0858
Enzymes [BR:
acu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Atc_0858
DNA replication proteins [BR:
acu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Atc_0858
DNA repair and recombination proteins [BR:
acu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Atc_0858
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
T2SSK
HHH_3
Motif
Other DBs
NCBI-ProteinID:
AEK57507
UniProt:
F9ZM25
LinkDB
All DBs
Position
859285..862785
Genome browser
AA seq
1166 aa
AA seq
DB search
MSTTGFVHLHVHSEYSLEDGIIPIKALIRRCVDWGMPAIAVTDHGNLFALVKFYQAAREA
GVKAIIGSEVWLCPPDQPEDPSSLVLLCRDRTGFRNLSRLLSRGYLEGLRHGRPQLQHDW
LQGHTEGLIALSAAARGDVGRALLQHQPDVARQWAERYAQWFPEAFYLELQRNGEPGQEA
LLAATVDLAYALDLPVVATNNAHFLDAEDFKAFDARRCIAAGYTLDDERRPRRFNPEHRL
ASPAEMLERFRDLPEACLQTVEIAKRCTVELTLGRYALPDYPTPDGSPIDVYFQKAAEQG
LAERLEALGIDGAAATPYRERLLREVDVIRQMGFPGYFLIVADFIQWAKDHDVPVGPGRG
SGAGSLVAYALRITDLDPIAYGLLFERFLNVERVSMPDFDVDFCMEQRDRVIQYVADKYG
RDRVGQIITFGTLKARAVVRDVGRVLNLPYGFVDQLAKLVPGDLGMTLARALEESEELRR
RQTEEDDVRELLDIALRLEGRPRHASTHAGGVVIGPEPLADRLPLFSDATEGSGNVTQLD
KDDVEKMGLVKFDFLGLRTLTILDIAVKGINRARAAEGKAALDLQKIPLDDPATFALLKS
THTVAVFQLESSGMRDLLRRLQPDNFGDIVALVALFRPGPLQSGMVDDFIARKHGRAAVS
YPHPDLKPVLAETYGVMVYQEQVMQAAQILAGYSLGGADILRRAMGKKKPEEMAKQREIF
LQGAARRGIDSHQAGAIFDLMEKFAEYGFNKSHSAAYALVSYQTAYLKAHYPSHFMAAVL
TADMDHTDKIVAMIGECRRMGLAILSPSVQHSALEFLPVAEGIRFGLGAIKGLGRGAVQA
IIAAREADGPFRDFYDFLCRVDLQRLNRRALEALIKAGALDDLGPSRECLLASLDAFLEA
AAQTRAARDSQQISLLGAAEEQPSAPPWREAPAWTGIERLQRERETLGFYLSGHPLLEHR
PQLAAMGAQDLGGLTAGSGLVLVAGIVVGRRSTRSKRGDRIYFLTLEDEVGRCDVVVFAE
TWQRAEYRGEGDAPLLVLGEIAEDSYSGGLRLTAQRLLALDQARTLLAETLECRLLEGTR
AAQLASCLDTPGGSLRLRLWLPLADGVEVLLEPDDRWQIMASDEVLARLAQFAPAAAWRW
RFAPLTKLVDNVVSLESSRVLRRHPA
NT seq
3501 nt
NT seq
+upstream
nt +downstream
nt
atgagcactacgggtttcgttcatctgcacgtacactccgagtattctctggaggatggc
atcatccccatcaaggcgctgattcgccgttgcgtagactggggtatgccggccattgcc
gtcaccgatcacggcaatctgttcgcattggtgaaattctatcaggcggcgcgggaggcc
ggagtcaaggccatcatcggcagcgaggtgtggctctgcccgccggatcagccggaagat
cccagcagcctggtcttactctgccgcgatcgcactggctttcgcaatctcagccggctg
ctcagtcggggctatctggagggcctgcggcacggtcgaccgcagctgcagcacgactgg
ctgcaggggcacacggaaggcctcatcgcgttgtccgccgctgcccgaggcgatgtcggc
agggccctgctccagcatcagccagacgtggcgcgccaatgggccgagcgctatgcccag
tggttcccggaggccttctatctggaactgcaacgcaatggcgagccagggcaggaggcg
ttgctggcggcgacggtggatctggcctatgcactggatctcccggtggtggccaccaac
aacgcccactttctcgacgccgaagatttcaaggccttcgatgcccgccggtgcattgcg
gccggctataccctggatgacgagcgtcgtccgcgacgtttcaatcccgagcatcgtctg
gcctcgccggccgagatgctggagcgtttccgagatctgcccgaggcctgtctgcagacc
gtggaaattgccaaacgctgtactgtggagcttaccctgggtcggtacgccttgccggat
tatcccactcccgatggcagtcctatcgacgtctacttccagaaggccgccgagcagggc
ctcgcggaacggctggaggctctgggtatcgatggtgcggcggcgacgccctaccgcgag
cgtctgctgcgggaagtggacgtcatccgccagatgggcttccccggttacttcctcatc
gtcgcggatttcatccagtgggccaaggatcacgatgttcccgtgggtcccggacgcggc
tccggtgccggatcgttggtggcctatgccctgcgcatcaccgatctcgaccccatcgcc
tatggccttcttttcgagcgctttctcaatgtcgaacgggtctccatgccggatttcgac
gtcgatttctgcatggagcagcgcgaccgggtgatccagtacgtcgccgataaatatggg
cgggaccgggtcgggcagatcatcaccttcggcaccctgaaggcgcgcgccgtcgtccgc
gatgtcggtcgggtgctgaatctcccctatggtttcgtcgatcagttggcaaagctcgta
ccgggagatctgggcatgacccttgcgcgtgctctggaggagtcggaggagttgcgccgg
cggcagacggaagaggacgacgtgcgtgagctcctggacatcgctctgcgactcgagggg
cggccgcgccacgcatccacccacgccggtggcgtggtcatcggcccggagccgttggcg
gatcgcctacccctgttcagcgacgcgacggagggcagcggtaacgtcacccagctggac
aaggacgatgtggagaagatgggtctcgtcaaattcgacttcctcggcctacgtaccctc
accatcctcgacatcgcagtaaagggcatcaaccgggcccgagcggcggaaggcaaggca
gccctggacctgcagaagatcccactggatgacccggcaacgtttgccttgctgaagtcg
acccacaccgtggccgtcttccagctggaatcctccggcatgcgcgatctgctgcgcagg
ctgcagcccgacaatttcggcgatatcgtcgccttggtggccctctttcgtccaggtccc
ctgcaatcgggcatggtggacgatttcattgcgcgcaaacacggacgcgcggccgtgagc
tacccccaccccgacctcaagccggttctggcggagacctacggcgtcatggtgtatcag
gaacaggtcatgcaagccgcccagattctcgccggatactccttgggcggtgccgacatc
ctgcgccgtgccatgggtaagaagaaacccgaggagatggccaagcagcgggaaatcttc
ctgcagggcgctgcgcgacgcggtatcgactcccatcaggccggtgccatcttcgatctc
atggagaaatttgccgaatacggcttcaacaagtcgcactcggcggcctacgccctggtg
tcctaccagacggcctacctcaaggcgcactaccctagtcacttcatggcggcggtactc
accgccgacatggatcacaccgacaagatcgttgccatgattggtgagtgccgacgcatg
ggactggccattctgtccccctcggtgcagcacagcgccctggagttcttgcccgtggcc
gaaggtatccgtttcggactcggcgccatcaaggggcttggccgcggtgcggtgcaggcc
attatcgctgcacgggaggccgacggcccgtttcgggacttttacgattttctctgccgc
gtcgacctgcagcgtctcaatcgccgtgccctggaagccctcatcaaggccggtgccctg
gatgatctcggaccatcgcgcgaatgcctcctggcttccctggatgcttttctcgaggcc
gctgcccagacccgcgcagcccgcgacagccaacagatctcactgctgggtgcggcagaa
gagcagccctcggctcccccgtggcgcgaggcacccgcctggaccgggatagagcgccta
cagcgggagcgggagacgctgggtttttatctcagcggtcacccgttgctggaacatcga
ccgcagttggcggccatgggtgcccaggatctggggggcttgaccgccggcagcggtctt
gtgctggtagcagggatcgtcgtcggacggcgcagtacccgcagcaagcgtggcgatcgt
atctacttcctcaccctcgaagacgaagtggggcgctgcgacgtcgtggtctttgccgag
acctggcagcgcgccgagtatcggggcgagggcgatgcccccttactggtgttgggtgaa
atcgccgaagacagctactccggcggcctgcgcttgacggcgcagcgcttgctcgccctg
gatcaagcacgcacattgctggcagaaaccctggagtgtcgcttactggaggggacccgt
gctgcccagttggcctcctgcctggataccccgggaggttcactgcgtttacgcctgtgg
ctgcccctagccgatggcgtcgaggtgctgctggaaccggacgatcgctggcagatcatg
gcctccgatgaggtccttgcccgccttgcgcagttcgcgccagccgctgcctggcgctgg
cgttttgcgcccctgaccaagctggtggacaatgtcgtctccctggaaagcagccgtgtc
ctgcggcggcacccggcgtga
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