Acidithiobacillus caldus SM-1: Atc_1854
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Entry
Atc_1854 CDS
T01581
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
acu
Acidithiobacillus caldus SM-1
Pathway
acu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
acu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Atc_1854
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acu03019
]
Atc_1854
Enzymes [BR:
acu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Atc_1854
Messenger RNA biogenesis [BR:
acu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Atc_1854
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
AAA_25
Motif
Other DBs
NCBI-ProteinID:
AEK58502
UniProt:
F9ZPT7
LinkDB
All DBs
Position
1911685..1912974
Genome browser
AA seq
429 aa
AA seq
DB search
MDWRRQGAADPATEIPLTLFTELGLDPALCAAAVARGYEQATPIQARAIPEILKGHDILA
AAQTGTGKTAAFALPILHRLARDPVSSGPRPVRALILVPTRELAAQVEDNIRLYRGQMPV
RSLMLIGGVKIGPQMEQLRNGADIVVATPGRLLDHLQQRSLRLDRVETLVLDEADRMLDM
GFIRDIRRIIGMLPAKRQNLLFSATFSPEIRQLAEGLLHQPIAVEVTPANATVDSITQRV
IRVDQERKRDLLLHLMDAHQWHQVLIFTRTKHGADRLARQMEREGFSAMAIHGNKSQGAR
TRALAEFKSGSLRALVATDIAARGIDIQRLPRVVNFELPQVAEDYVHRIGRTGRAGEDGE
AVSLVSGEERSQLQAVERLLRRRFDLEQVPGFEAKGHGPDRGVGKPVPARGHSLAAQGSR
RPRRQAGAN
NT seq
1290 nt
NT seq
+upstream
nt +downstream
nt
gtggactggcgccgacaaggcgcggccgatcctgccacggagattcccttgacattgttt
accgaattggggctggacccggccctctgtgctgctgccgttgcccgcggttatgagcag
gccacacccatacaggcacgcgccatccccgagatcctgaagggtcacgacatcctcgcc
gctgcccagactggtacgggcaagaccgctgctttcgctctacccattctccatcgtctg
gcccgggatcctgtgagctccggtccgcgtcccgtgcgcgcgctgattctcgtgcccaca
cgagaattggcggcgcaggtagaagacaacatccggctctacagagggcaaatgcccgta
cgttccctgatgctcataggtggcgtcaagattggcccgcagatggagcagctacgcaac
ggtgccgatatcgtcgtggcgacccccggacgactgctggatcacctgcaacagcgcagc
ctgcgtctggatcgcgtcgagaccttggttctggacgaggccgatcgcatgctggatatg
ggcttcatccgcgatattcgtcgaattatcgggatgttgccggcaaaacggcaaaatcta
ctcttctcggccaccttttcgccagagattcggcaattggccgaaggactgttgcaccag
cccatcgccgttgaagtgacacccgccaacgccaccgtcgacagtattacccagcgggtg
attcgcgtagaccaggagcgcaaacgcgatctactgctgcacctgatggatgcacaccaa
tggcatcaggtgctgatctttacccgcaccaagcacggtgcggatcgactagcgcgtcag
atggagcgggagggtttttcggccatggccatccacggcaacaaaagccaaggagcccga
acccgcgcgctggccgaattcaagtcgggaagcctgcgcgcgctggtcgccaccgatatc
gccgcgcgcggcatcgatattcagcggttgccgcgggtggtcaacttcgagctaccgcag
gttgccgaggactacgtccatcgtatcggccgcacgggtcgggccggcgaagatggcgag
gccgtctccctggtcagtggcgaggagcgtagccagctccaggcggtcgagcggctgctg
cgtcgccgctttgacctggaacaggtgcctggattcgaggcaaaagggcacggcccggac
cgtggtgtcggcaagcccgtcccggcgcgtggtcacagtctggctgcccagggctccaga
cggccaagacgacaagccggcgctaactga
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