Acidithiobacillus caldus SM-1: Atc_m126
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Entry
Atc_m126 CDS
T01581
Name
(GenBank) Single-stranded-DNA-specific exonuclease recJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
acu
Acidithiobacillus caldus SM-1
Pathway
acu03410
Base excision repair
acu03430
Mismatch repair
acu03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
acu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Atc_m126
03430 Mismatch repair
Atc_m126
03440 Homologous recombination
Atc_m126
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
acu03400
]
Atc_m126
DNA repair and recombination proteins [BR:
acu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
Atc_m126
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
Atc_m126
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Atc_m126
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
DUF7260
DUF7739
Toprim
Motif
Other DBs
NCBI-ProteinID:
AEK59657
UniProt:
F9ZU37
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All DBs
Position
megaplasmid:complement(125879..127612)
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AA seq
577 aa
AA seq
DB search
MRIQLRQVEHEPFTALTSAGIDPVLARVYSARGVAGPDDLDLGLAGLASYTQLKDIDQAA
KRLAIAIKNAEKLAIAGDFDSDGAAGASLLIEGILDLGGRLPSLFIPNRLTQGYGLSPGL
VAEMPADTNLVITVDNGIASIAGVAAARARGFDVIVTDHHLAGERLPEDCVAIVNPNQPG
CAFPWKGTAGVGVAFYLIAATRAKLREDKWFGEHRPEPNLSKYLDLVALATIADVAPFER
NNRIFIAAGLERIRQRRCRIGILALLEVAGVEPENVTAETVGFIVAPRINAAGRLEDMRT
GVRLLLSQDEQAAREIARTLDQLNRERRSIEDGIREEAEEIAAQIVSAPQDGEPFVLCPY
QPDWHEGVIGIVAARLRERFHRPTIVFTKAADGSIKGSGRSIPWFHIRDAIAAVDAQHPG
LITKFGGHAAAAGLSLAKETDIAVFTEAFAAVARRELRASDLEEIIYSDGELGESTACLD
TALAIEKGGPWGREFEPPIFHGTFLVKNVRELRSNTLKCTVQKEHWALDAIWFRRNSEQS
LEDGKRYTIAYALSVNRWRSRENLQLRIEKVLEEHSS
NT seq
1734 nt
NT seq
+upstream
nt +downstream
nt
atgcgcatccagctccgccaggtcgaacacgagccgttcaccgcgctcacctcggcagga
atcgatccggtccttgcacgagtctatagcgcgcgtggcgtggcgggtcccgatgacctg
gatctcggccttgcggggctggcttcgtacacgcaactcaaggacatcgaccaggcagca
aaaaggctggccattgcaataaaaaacgcagagaagctggccattgctggcgacttcgac
tccgacggagccgctggggccagtttgctcatcgaagggatcctcgaccttggcgggagg
ttaccgagcctgtttattcccaatcggctgacgcaaggatatggcctgtcacccggactc
gtcgcggaaatgcccgccgataccaatctcgttatcaccgtcgacaacggcattgccagc
attgcgggggtggccgccgcgagagcccgcggcttcgacgtcatagtcaccgaccaccat
ctggccggagaacgtctgccagaggattgcgtggcgatcgtgaatcccaaccagcccgga
tgcgcttttccctggaaggggacagccggcgtcggcgtggctttttatctgatcgcggca
acccgcgccaagctgcgcgaggacaagtggttcggggaacatcgcccggaacccaacctg
tcgaagtatctcgatctcgtggccttggcgacgatagcggatgtggcgcccttcgaacgc
aacaaccggatcttcatcgccgcaggcctcgagcgcattcgccagcgccgttgccgcatc
ggcatcctcgcattattggaggtcgccggcgttgagccagaaaacgtcaccgccgagacg
gtaggcttcatcgttgccccgaggataaatgccgccgggcgactggaggacatgcgtacc
ggtgtgcggctgctgctctcccaggatgagcaggctgcccgagagatcgcccggaccctg
gaccagctgaaccgcgagcgtcgcagcatcgaagacggcattcgcgaggaagcggaggaa
atcgcggcccagatcgtgtctgcaccacaagacggcgaaccgtttgttctgtgcccgtac
cagccggactggcacgagggagtaatcggcatcgtggccgcccgcctgcgcgagcgtttc
catcggccaaccatcgtgttcaccaaagccgcagacggctccatcaaaggctcggggcgc
tccatcccctggttccacatccgcgacgccatcgccgccgtcgacgcccagcaccctggc
ctcatcaccaagtttggtggccatgcggccgctgctggcctgtctctagcgaaggagaca
gacatcgccgtattcaccgaggccttcgccgcggtcgctcgccgagaactgcgcgcaagc
gatctggaagaaatcatttattcggatggcgagcttggagaaagcacggcgtgtctggac
acggcgctggcgattgagaaaggcggcccatggggaagggagtttgagccgccaattttt
cacggcacattcttggtaaaaaacgtccgggaattgcggtccaacacgctgaaatgtaca
gtgcagaaggagcattgggcgttggatgccatctggtttcggcgcaacagcgaacaatcc
ctggaggatgggaagcgatatacgattgcctacgccttgtcggtgaatcgttggcggagc
cgggaaaatctgcagctgcgtatcgaaaaagtattggaggagcattcgtcgtga
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