Agrobacterium cucumeris: KZ699_00045
Help
Entry
KZ699_00045 CDS
T09081
Symbol
rpoN
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
acuc
Agrobacterium cucumeris
Pathway
acuc02020
Two-component system
acuc02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
acuc00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
KZ699_00045 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
KZ699_00045 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
acuc03021
]
KZ699_00045 (rpoN)
Transcription machinery [BR:
acuc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
KZ699_00045 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_IclR
2Fe-2S_thioredx
HU-DNA_bdg
Motif
Other DBs
NCBI-ProteinID:
WHO08235
LinkDB
All DBs
Position
1:complement(7532..9082)
Genome browser
AA seq
516 aa
AA seq
DB search
MALSASLLLRQNQSLVMTPQLMQSIQLLQMTHFELTQFIAQEVERNPLLEIAANDGDLGG
DIPDNADNFSDTDGEASDKNPTVTADSDDWYGDRAANLGEQLDTSFENVFPDDAEPRKAD
APELASQWKSMPGQESGESYDLDDFVAAKQSLADHLNQQMPLAISSAEDRMIADALIGQL
DETGYIAADAVDDVAERLGTAPSAVEHVLKTLQGFDPPGVFSRSLSECLAIQLAQRDRLD
PAMRALIDNLELLAKRDFATLKKLCGVDEEDLLDMLAEIRTLNPRPGAGYDSTVSETIVP
DIIVRPSSSGGWLVEINPETLPRVLINQSYFAEVSKHKARAGEDQDFLSECMQTAHWLTR
SLDQRARTIMKVATEIVRQQDAFLVNGVDHLRPLNLKTVADAIKMHESTVSRVTSKKYML
TPRGLFELKYFFSVSISAVEGGDSHSAEAVRHRIKAMIAQEAAEAVLSDDDIVDNLKKSG
VDLARRTVAKYREAMNIPSSVQRRREKKALAKFSVF
NT seq
1551 nt
NT seq
+upstream
nt +downstream
nt
atggcattgtctgccagccttttgctgcgtcaaaaccagtctctcgtcatgacaccgcag
ctgatgcagtccatccagctgcttcagatgacgcatttcgagctgacgcagtttatcgcg
caggaagtggagcgtaatccgctgctcgaaattgcagcaaacgacggcgatttgggcggc
gacatacctgataatgcggataatttcagcgacaccgacggcgaagcctcggataaaaac
cccacggtaacagccgacagcgacgactggtacggcgaccgcgccgcaaatctcggtgaa
cagctcgatactagtttcgaaaatgtcttcccggacgatgccgagcccagaaaggccgat
gcgcccgaactggcaagccagtggaaatccatgcccgggcaggaatccggcgaaagctat
gatctcgacgatttcgtcgccgcgaaacaaagccttgctgaccatctcaatcagcaaatg
ccgctggccatatcctccgccgaggatcgcatgatcgccgatgcgctgatcggccagctc
gacgaaaccggatatatcgcagcggatgccgtcgatgatgtcgctgaacggctgggaacg
gcgccatcggcggtggagcatgttttaaagacgcttcagggtttcgatcctccgggcgtg
ttttcccgttcgttgagcgaatgtctggcaatccagctcgcccagagggatcggctcgat
ccggcgatgcgggccctgatcgataatctcgagcttttggccaaacgcgactttgctacc
ttgaaaaaactctgcggcgtcgatgaagaggaccttctcgacatgctggcggagatccgg
acgctcaatccgcgtcccggcgcgggttatgattcgaccgtttcggagacaatcgttccc
gatatcatcgttcggccctcttcatccggcggctggcttgtggagataaatcccgaaacc
ctgccgcgtgtgctcatcaaccagagctatttcgccgaggtttcgaaacataaggcgcgc
gcaggtgaggaccaggatttcctttccgagtgcatgcaaacggctcactggctgacccgc
agcctcgaccagcgtgcccggacgatcatgaaggtagcgaccgagatcgtgcgccagcag
gacgcctttctcgtcaacggcgttgatcacctgcgcccgctgaacctcaagacggtggcc
gacgccatcaagatgcacgaatccaccgtcagccgggtgacatcgaagaaatacatgctg
acgccacgcgggctgttcgagctcaaatatttcttcagcgtctcgatcagcgcggttgaa
ggcggcgacagccattcggcggaagcggtgcgtcatcgcatcaaggccatgatcgcccag
gaggctgccgaggcggtgctttccgatgatgacatcgtcgacaatctgaaaaaaagcggt
gttgatctcgcccgccgcactgtcgccaaatatcgtgaggcgatgaacatcccctcctcc
gttcagagacgccgcgaaaagaaggcgctcgcgaagttttcagtcttctga
DBGET
integrated database retrieval system
