Agrobacterium cucumeris: KZ699_05280
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Entry
KZ699_05280 CDS
T09081
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
acuc
Agrobacterium cucumeris
Pathway
acuc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
acuc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KZ699_05280
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acuc03019
]
KZ699_05280
03009 Ribosome biogenesis [BR:
acuc03009
]
KZ699_05280
Enzymes [BR:
acuc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
KZ699_05280
Messenger RNA biogenesis [BR:
acuc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
KZ699_05280
Ribosome biogenesis [BR:
acuc03009
]
Prokaryotic type
rRNA processing factors
KZ699_05280
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
zf-CCHC
Motif
Other DBs
NCBI-ProteinID:
WHO09204
LinkDB
All DBs
Position
1:complement(1076146..1079076)
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AA seq
976 aa
AA seq
DB search
MADKMLIDASHEEETRVVVVRGNRIEEFDFESEHKKQIRGNIYLAKVTRVEPSLQAAFVD
YGGNRHGFLAFAEIHPDYYQIPLADRQALLRAEAEDHRRSDDFESADAPEPGAPAIDLSQ
VDQPDVGIVSASETVEVVVTEEAAPATAAEEVSEETAVAAVETIAEEAPAEEEKPKKRVR
RPRVKKKTEEELAAEAAEASSDEDGSTGGEMAAMVDTDTISEEVEGLRRGNDDDDDDDDD
DHHEKEVIESVGAEDAMEEVPDRVARKPRKQYRIQEVIKRRQILLVQVAKEERGNKGAAL
TTYLSLAGRYSVLMPNTARGGGISRKITQPTDRKRLKEIARDLEVPQGMGVILRTAGANR
TRVEIKRDFEYLMRLWENVRTLTLNSTAPCLVYEEGSLIKRSIRDLYNKDIGEIIVSGEE
GYREAKDFMKMLMPSHAKVVQPYRDIHPIFSRSGIEAQLDRMLQPQVTLKSGGYLIINQT
EALVSIDVNSGRSTREHSIEETALTTNLEAAEEVARQLRLRDLAGLVVIDFIDMEEKRNN
RAVEKKLKDCLKNDRARIQVGRISHFGLLEMSRQRIRASVLESTTQVCQHCGGTGHVRSE
SSIALHVLRGVEEYLLRNTTHNITVRCTPETALYLLNHKRGTIVDYEGRFGVSIIIAADS
SVGAQHFAIDRGEAVENPVKIESLIQMLPNFVEEEDDIVIEAEEDEEEEEIVKAQAGEPR
QQQQGENGEDGKRKRKRRRRRRGKGGQNDQNGALDAQAGDDADDAEGDDDSAEADDTDGD
ADENGVNEAANSDEDGKRKRRRRGKRGGRRNRDEALDAAGTEAGDEGETEGEEVSAAAPV
TEEPTAADVVEGVVADVVAEEAPKKPRRTRKAKAKTEAEDAPKAETVETVEPVVIEPAVV
EATVVDVAIEEIGEASADLAPEADAPATEEKTRANRGSNVSSSEPVVTSSGSSANNPDGD
EPKPRKGGWWQRKGFF
NT seq
2931 nt
NT seq
+upstream
nt +downstream
nt
atggcagacaaaatgcttatcgacgcctcccacgaagaggagacacgcgtagtcgttgtc
cgtgggaaccggatcgaagaattcgatttcgaatcggagcacaagaaacagatccgcggc
aatatctaccttgccaaggtgacgagggttgaaccctcccttcaggcggccttcgtcgat
tacggtggaaatcgccacggttttctcgcctttgcggaaatccatccggattattaccag
atcccgcttgccgaccgtcaggctctgctgagggccgaagccgaagatcatcgccgcagc
gacgacttcgaatcggcagatgcgcccgagcccggtgcgccggcaatcgatctttcgcag
gttgatcagcccgatgtcggcatcgtctcggcaagcgagaccgttgaagtcgtggtgacg
gaagaggctgcgccagcgactgcagccgaggaagtctccgaagagactgcggttgcagcc
gtcgagaccattgcggaagaagcaccggccgaggaagaaaagccgaagaagcgcgttcgc
cgcccccgcgtcaagaagaagacggaagaagaactcgcagccgaagccgctgaagcctct
tccgacgaagacggcagcaccggcggcgagatggccgcaatggtcgataccgatacgatt
tccgaagaagtcgaaggccttcgccgcggcaatgacgatgatgacgacgacgatgacgac
gatcatcacgaaaaggaagtgatcgaatccgtcggcgccgaagacgcgatggaggaagtt
cccgatcgcgttgcccgcaagccgcgcaagcagtatcgcatccaggaagtcatcaagcgc
cgccagatccttctggtgcaggtggccaaggaagaacgtggcaacaagggggccgcactc
accacctacctgtcgcttgccggccgttattccgtgctgatgccgaatacggcgcgtggc
ggtggcatttcccgcaagattacccagccgaccgaccgcaagcgcctgaaggaaatcgcg
cgcgatctggaggttccgcagggcatgggcgtcattctgcgtaccgcaggcgccaaccgc
acccgcgtcgaaatcaagcgcgacttcgaatatctgatgcgcctgtgggaaaacgtccgc
acgctgacgctgaattccaccgccccctgcctcgtttacgaggaaggctcgctgatcaag
cgctcgatccgcgatctctataacaaggatatcggcgagatcatcgtttccggcgaagaa
ggctatcgtgaagcgaaagacttcatgaagatgctgatgccgagccatgccaaggtggtt
cagccttaccgcgacattcacccgatcttctcgcgctccggcatcgaagcccagctcgac
cggatgctgcagccgcaggtgacactgaaatccggcggttacctcatcatcaaccagacg
gaagcgctggtttcgatcgacgtcaactccggccgttcgacgcgcgagcattccatcgag
gaaaccgcgctgacgacgaacctcgaggcggcggaagaagtggcgcgccagctgcgcctg
cgcgaccttgccggtcttgtcgtcatcgacttcatcgacatggaagaaaagcgcaacaac
cgcgctgtcgaaaagaagctcaaggattgcctgaagaacgatcgcgcccgcatccaggtc
ggccgcatctcgcatttcggcctcctggaaatgtcgcgccagcgcatccgcgcttcggtg
ctggaatcgaccacacaggtctgccagcattgcggcggcacgggccatgtacgttcggaa
tcctccatcgcgctgcatgttctgcgcggcgtcgaggaatatctgctgcgcaacaccacc
cataacatcacggtgcgctgcacgccggaaacggcactttacctgctcaaccacaagcgt
ggcacaatcgtcgattatgaaggccgcttcggcgtgtcgatcatcattgccgccgattca
agcgtcggtgcgcagcatttcgccatcgatcgcggcgaagccgtcgaaaatccggtgaag
atcgaaagcctcatccagatgcttccgaacttcgtcgaagaggaagacgatatcgtcatc
gaggcggaagaggacgaggaagaggaagaaatcgtcaaggcgcaggctggcgagccgcgt
cagcagcagcagggcgaaaacggtgaagatggcaagcgcaagcgcaagcgtcgtcgccgc
cgtcgtggcaagggcggacagaacgaccagaacggcgctcttgacgcacaggccggcgat
gacgccgatgatgctgaaggtgacgacgacagcgccgaagccgatgacaccgatggtgat
gccgacgaaaacggcgtgaacgaagccgcaaactccgacgaagacggcaagcgcaagcgc
cgccgtcgcggcaagcgtggcggccgccgcaaccgtgacgaggctctcgatgctgcaggc
acggaagccggcgacgaaggcgagacggaaggcgaagaggtttccgccgcagcgcccgta
accgaagagcccaccgccgccgacgtggtggaaggcgtggttgccgacgttgtggctgaa
gaagcgccgaagaagccgcgccgcacccgcaaggcgaaagccaagaccgaggctgaagac
gcaccgaaggctgaaaccgttgaaacggtcgagccggtggtcatcgagccggcagtcgtt
gaagcgaccgtcgtcgatgtcgccatcgaagaaatcggtgaagcttcggccgatctggcg
cctgaagcagacgcacccgcgacggaagaaaagacccgcgcgaaccggggcagcaatgtc
tccagttcggagccggtggtgacctcttccggttcgtccgcgaacaatcccgacggcgat
gagccgaagccgcgcaagggcggctggtggcagcgcaagggcttcttctga
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integrated database retrieval system
