Agrobacterium cucumeris: KZ699_08340
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Entry
KZ699_08340 CDS
T09081
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
acuc
Agrobacterium cucumeris
Pathway
acuc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
acuc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
KZ699_08340 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
acuc03021
]
KZ699_08340 (rpoC)
03400 DNA repair and recombination proteins [BR:
acuc03400
]
KZ699_08340 (rpoC)
Enzymes [BR:
acuc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
KZ699_08340 (rpoC)
Transcription machinery [BR:
acuc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
KZ699_08340 (rpoC)
DNA repair and recombination proteins [BR:
acuc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
KZ699_08340 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
WHO07122
LinkDB
All DBs
Position
1:complement(1708339..1712547)
Genome browser
AA seq
1402 aa
AA seq
DB search
MNQEVMNLFNPQVPAQHFDSIRISIASPEKILSWSYGEIKKPETINYRTFKPERDGLFCA
RIFGPIKDYECLCGKYKRMKYKGIICEKCGVEVTLSRVRRERMGHIELAAPVAHIWFLKS
LPSRISTLLDMTLKDVERVLYFENYIVTEPGLTSLKQNQLLSEEEYMIAVDEFGEDQFTA
MIGAEAIYEMLASMNLEKIAGDLRAELAETTSDLKQKKLMKRLKIVENFMESGNRPEWMI
MKVVPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPGIIIRNEKRM
LQESVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTG
PELKLHQCGLPKKMALELFKPFIYARLDAKGYSSTVKQAKKLVEKEKPEVWDILDEVIRE
HPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQL
EARVLMMSTNNILHPANGHPIIVPSQDMVLGLYYLSIMNQNEPGEGMAFSDIGELHHALE
NKVVTLHAKIRGRFKTVDADGKPVSKIHETTPGRMLIGELLPKNVNVPFDVCNQEMTKKN
ISKMIDTVYRHCGQKDTVIFCDRIMQLGFSHACRAGISFGKDDMVIPDSKVKIVGDTEAL
VKEYEQQYNDGLITQGEKYNKVVDAWGKATEKVAEEMMARIKAVEFDPETGRQKPMNSIY
MMSHSGARGSPNQMRQLGGMRGLMAKPSGEIIETPIISNFKEGLTVNEYFNSTHGARKGL
ADTALKTANSGYLTRRLVDVAQDCIVVSTDCGTDKGLTMTAIVDAGQVVASLGARILGRT
ALDDIDHPVSGENLVKAGTLIDEADVAVIEKAGIQSVRIRSALTCEVQVGVCGVCYGRDL
ARGTPVNMGEAVGVIAAQSIGEPGTQLTMRTFHLGGTANVVDQSFLEASYEGTIAIKNRN
ILRNSEGTLIAMGRNMAVTILDERGQERSSQRVAYGSKIFVDDGDKVKRGQRLAEWDPYT
RPMMTEVEGTVHFEDLVDGLSVLEATDESTGITKRQVIDWRSTPRGSDLKPAIVIKDASG
AVAKLARGGEARFQLSVDAILSVEPGSKVFQGDVLARSPLESAKTKDITGGLPRVAELFE
ARRPKDHAVIAEIDGTIRLGRDYKNKRRVMIEPAEDGVEPVEYLIPKGKPFHLQEGDYIE
KGEYILDGNPAPHDILAIKGVEALASYLVNEIQEVYRLQGVVINDKHIEVIVRQMLQKVE
ITDAGDSQYIVGDNVDRIELDDMNDRLIEEGKKPAYGDPVLLGITKASLQTPSFISAASF
QETTKVLTEAAIAGKTDTLQGLKENVIVGRLIPAGTGGTMTQIRRIATSRDDLILEERRK
GTGAGSANQMLQDMTDQVPAAE
NT seq
4209 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaagaggtcatgaatcttttcaatcctcaggtgcctgcgcagcatttcgattcc
atccggatttcgattgcttcgccggaaaaaatcctgtcgtggtcctacggcgagatcaag
aagccggaaaccatcaactaccgtacgttcaagccggaacgcgacggccttttctgcgcg
cgtatcttcggaccgatcaaggactacgagtgcctgtgcggcaagtacaagcgcatgaag
tacaagggcatcatctgcgaaaagtgcggcgtcgaagtcacgctgtcgcgcgttcgccgt
gagcgcatgggccatatcgagctcgcagcgccggttgcccacatctggttcctgaagtcg
cttccctcgcgtatctcgaccctgctcgacatgacgctgaaggatgtcgaacgcgttctt
tatttcgagaactacatcgtcaccgagcctggcctcacttcgctgaagcagaaccagctt
ctgtccgaagaagagtacatgatcgccgtcgacgagttcggcgaagaccagttcaccgcc
atgatcggcgctgaagccatctacgagatgctggcttcgatgaacctcgaaaagatcgcc
ggcgacctgcgtgccgaacttgctgagaccacgtctgatctcaagcagaagaagctgatg
aagcgcctgaagatcgtcgagaacttcatggagtcgggcaaccgtcctgaatggatgatc
atgaaggtcgttccggtcattccgccggacctgcgtccgctggttccgctggatggcggc
cgtttcgcgacgtccgaccttaacgatctctatcgccgcgtcatcaaccgtaacaaccgt
ctgaagcgcctgatcgagcttcgcgcacctggcatcatcatccgcaacgaaaagcgtatg
ttgcaggaatccgtcgatgcgctgttcgataacggccgtcgcggtcgcgtcatcacgggt
gccaacaagcgcccgctgaagtcgctctccgacatgctcaagggcaagcagggccgcttc
cgccagaaccttctcggcaagcgcgtcgactattccggtcgttcggtcatcgtgaccggt
ccggaactgaagctgcaccagtgcggcctgccgaagaagatggcgctcgaactgttcaag
ccgttcatctacgcccgcctcgacgccaagggttactcctcgaccgtcaagcaggccaag
aagctggttgaaaaggaaaagcctgaggtctgggatatcctcgacgaggtcatccgcgag
catccggttcttctgaaccgcgcaccgacgctgcaccgtctgggtatccaggctttcgaa
cccatgctggtcgaaggcaaggccatccagctgcacccgctcgtctgcacggccttcaac
gccgacttcgacggtgaccagatggctgtccacgtgccgctttcgctggaagcccagctg
gaagcacgcgtgctgatgatgtcgaccaacaacatcctgcatccggcgaacggtcatccg
atcatcgttccgtcgcaggacatggttctcggcctctattacctgtcgatcatgaaccag
aacgagccgggcgaaggcatggccttctcggatatcggtgagctgcatcacgcgcttgaa
aacaaggtcgtgacgctgcatgccaagatccgcggccgcttcaagaccgtggatgccgat
ggcaagccggtttcgaagatccatgaaacgacccctggccgtatgctgattggcgaactt
ctgccgaagaacgtcaacgtgcctttcgacgtctgcaaccaggaaatgaccaagaagaac
atctccaagatgatcgacacggtctaccgtcattgcggccagaaagacacggtcatcttc
tgcgaccgcatcatgcagctcggcttcagccacgcctgccgcgccggcatttcgttcggc
aaggacgacatggtcattccggacagcaaggtgaagatcgttggcgacaccgaagccttg
gtgaaggaatacgaacagcagtacaatgatggtctcatcacccagggcgaaaagtacaac
aaggttgtcgacgcctggggcaaggcaaccgaaaaggtcgccgaagaaatgatggcacgc
atcaaggctgtcgagttcgatccggaaacgggccgccagaagccgatgaactccatctac
atgatgtcccactcgggcgcccgtggttctccgaaccagatgcgtcagctgggcggcatg
cgcggcctgatggcgaagccgtcgggtgaaatcatcgagacgccgatcatctcgaacttc
aaggaaggcctgaccgttaacgagtacttcaactcgacccacggtgcccgtaagggtctg
gcagacaccgccctgaagacggcgaactcgggttaccttacccgtcgtctcgtcgacgtc
gcgcaggattgcatcgtcgtttccaccgattgcggcaccgacaagggcctcaccatgacc
gccatcgtcgatgccggtcaggtcgttgcctcgctcggcgcgcgtatcctcggccgtacg
gctcttgatgatatcgatcatccggtttccggcgaaaacctcgtcaaggccggcacgctc
atcgatgaggccgatgtggccgtcatcgaaaaggcgggcatccagtccgtgcgcatccgc
tcggctctgacctgtgaagtgcaggttggcgtctgcggcgtctgctacggtcgtgacctt
gcacgcggtacgcctgtcaacatgggcgaagccgttggcgtcatcgccgcacagtcgatc
ggtgaaccgggcacgcagctcaccatgcgtaccttccaccttggcggtacggcgaacgtg
gtcgaccagtcgttcctcgaagcctcttacgagggcacgattgcgatcaagaaccgcaac
attctgcgcaactccgaaggcactctcatcgcgatgggccgtaacatggccgtcaccatt
ctcgatgagcgcggccaggagcggtcttcgcagcgcgttgcctatggttcgaagatcttc
gtggacgacggcgacaaggtaaagcgtggccagcgtctggcagagtgggacccctacacc
cgtccgatgatgacggaagtggaaggtaccgttcacttcgaggacctcgtcgacggtctt
tccgttctggaagccaccgacgaatccaccggcatcaccaagcgtcaggttatcgactgg
cgttcgacgccgcgcggttcggacctcaagcccgcgatcgtcatcaaggacgcttccggc
gctgttgcgaagcttgcccgtggtggcgaagcccgcttccagctgtccgtggacgccatc
ctgtcggtcgagccgggttcgaaggtcttccagggtgacgtgcttgcacgttcgccgctg
gaaagcgccaagacgaaggacatcaccggtggtctgccgcgcgttgccgaactgttcgaa
gcacgtcgtccgaaggatcacgccgtcatcgccgagatcgacggtacgatccgcctgggt
cgcgactacaagaacaagcgtcgcgtgatgatcgagcctgcggaagacggcgtcgagccg
gtcgaatacctgatcccgaagggcaagcccttccatcttcaggaaggcgactacatcgag
aagggtgaatacattctcgacggcaacccggcgccgcacgacattctggcaatcaagggc
gtggaggctctggcttcctacctcgtgaacgaaatccaggaagtctaccgactgcagggc
gttgtgatcaacgacaagcacatcgaagtgatcgttcgccagatgctgcagaaggtcgaa
atcaccgatgccggcgacagccagtacatcgttggcgacaatgtcgaccgtatcgagctg
gacgacatgaacgaccgcctgatcgaggagggcaagaagccggcttacggcgatcctgtt
ctgctcggcatcaccaaggcttcgctgcagacgccgtccttcatctcggccgcatccttc
caggaaaccaccaaggttctcacggaagctgcgattgccggcaagacggacacgctgcag
ggcctcaaggaaaacgtcatcgtcggccgtctcatcccggccggtactggcggcaccatg
acgcagatccgccgcatcgccacctcgcgcgacgacctcattctcgaggaacgccgcaag
ggtacgggtgcaggttctgcgaaccagatgctgcaggacatgacggatcaggttccggcc
gccgaataa
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