Acinetobacter cumulans: C9E88_005535
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Entry
C9E88_005535 CDS
T06087
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
acum
Acinetobacter cumulans
Pathway
acum03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
acum00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
C9E88_005535 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
acum03021
]
C9E88_005535 (rpoC)
03400 DNA repair and recombination proteins [BR:
acum03400
]
C9E88_005535 (rpoC)
Enzymes [BR:
acum01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
C9E88_005535 (rpoC)
Transcription machinery [BR:
acum03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
C9E88_005535 (rpoC)
DNA repair and recombination proteins [BR:
acum03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
C9E88_005535 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
QCO21006
LinkDB
All DBs
Position
complement(3164581..3168780)
Genome browser
AA seq
1399 aa
AA seq
DB search
MKDLLDIMRKKTDSDGHAPVEFDRIRIGLASPEMIKSWSHGEVKKPETINYRTFKPERDG
LFCAKIFGPVKDYECLCGKYKRMKYKGVICEKCGVEVTTAKVRRERMGHIELASPVAHIW
FLKSLPSRIGLLLDMTLRDIERVLYFESYVVTDPGMTPFEKYQLLNDEEYFNALEEHGDE
FTAKMGAEAVQDLLKDIDLENEISRLREEIPNTTSETKLKKASKRLKLMEAFKDSNNKPE
WMVLTVLPVLPPDLRPLVPLEGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNE
KRMLQESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVI
TVGPSLRLHQCGLPKKMALELFKPFIFAKLQASGQATTIKAAKKMVERETPEVWDVLASV
IRQHPVMLNRAPTLHRLGLQAFEPILIEGKAIRLHPLVCAAFNADFDGDQMAVHVPLTLE
AQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYITRDAINAKGEGMVFADTDEVNR
ALATGQVDLHARVKARVHQTVIDENGNREHQTIVVDTTPGRCLLWEVVPEGMDFQQINVE
MTKKNISKIINSCYRKLGLKDTVIFADQLMYLGFRQATRSGVSVGMEDMLIPPNKEAIIA
KSEAEVREIEQQFEQGFVTAGERYNKVVDIWARTNDQVAKAMMDNLSYTTVKNKQGEDEK
QKSFNSIYMMSDSGARGSAAQIRQLAGMRGLMAKPDGSIIETPIKANFREGLTVLQYFIS
THGARKGLADTALKTANSGYLTRRLVDVAQDLVITEPDCGTFGGLVMTPFIQGGDVIENL
GTRVLGRVLAEDAKKPGSDDVILPRNTLIDEKLANYLEEQGVDEVKVRSVVNCESTFGVC
AKCYGRDLARGHLVNPGESVGVMAAQSIGEPGTQLTMRTFHVGGAASRTSAANSIQVRNK
GTVRFHNVKTVQHAKGHLVSTSRSGEIGIADDIGRERERYKIPYGASIIIKDGESVEAGG
IVATWDPHTHPLVTEFAGKVRFSQIADGVTVTSKTDDATGMTTIEILPVTSRPASGKDMR
PAVVLDQADGSEQFYFLPQNTILTVRDGETIGVGDVIGRVPQESSRTRDITGGLPRVADL
FEARKPKEHAILAEISGVVSFGKETKGKNRLVITPDDGSEIYEELIPKWRTINVFEGEHV
NRGETISDGPQNPHDILRLKGEVALTNYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKV
DITDGGDTSFIKGEQVDYIRVMGENQAVLAQNKFPAKFERQLMGITKASLSTDSFISAAS
FQETTRVLTEAAVTGKEDDLRGLKENVVVGRLIPAGTGLAYHLERRRQEAEAAELELHND
FSDVDQALSQAFSDEFNGL
NT seq
4200 nt
NT seq
+upstream
nt +downstream
nt
ttgaaagacttgctcgatatcatgcgcaaaaagacggattcagacggtcatgctcctgta
gagtttgatcgcatccgtattggtcttgcgtcaccagaaatgattaagtcatggtctcac
ggtgaagttaaaaagccagaaaccatcaactaccgtacgttcaaaccagaacgtgatggt
ttattctgtgccaaaatctttggtccagtaaaagattacgaatgcttgtgtggtaaatac
aagcgtatgaaatacaaaggcgtcatttgtgaaaaatgtggcgttgaagtaacaactgcg
aaagttcgtcgtgaacgtatgggtcacattgagcttgcatctccagttgcgcatatttgg
ttcttgaaatcacttcctagccgtatcggtcttcttttagacatgacgctacgtgatatc
gaacgcgtattgtatttcgaatcttacgttgtaacagatccgggtatgactccatttgag
aaataccaacttcttaacgatgaagaatacttcaatgcgttagaagaacacggtgacgaa
ttcacagcgaaaatgggtgctgaagcggttcaagacttgttgaaagacatcgatcttgaa
aacgaaatctcacgcctacgtgaagaaattccaaatacaacttcagaaactaagcttaag
aaagcttctaagcgtttgaagttgatggaagcgttcaaagattcgaacaacaaaccagaa
tggatggtgttgactgtacttccagttcttccaccagatcttcgtccgttagtaccactt
gaaggtggtcgtttcgcgacttctgatttgaacgatctttaccgtcgtgtgatcaaccgt
aacaaccgtttaaaacgtcttcttgaccttgcagcaccagacattatcgtacgtaacgaa
aaacgtatgttacaagagtctgtggatgcattgttagataacggccgtcgtggtcgtgcg
attactggttcgaacaaacgtcctcttaaatctttggcagatatgatcaaaggtaaacaa
ggtcgtttccgtcaaaacttacttggtaagcgtgttgactactctggtcgttctgtaatt
accgtaggtccatctttacgtttacaccaatgtggtcttccgaaaaaaatggcacttgaa
ttattcaagccattcattttcgctaaactacaagcatctggccaagcaacaaccattaaa
gctgcgaagaaaatggttgagcgcgaaactccagaagtttgggacgttcttgcatctgta
attcgtcaacatccagtgatgttgaaccgtgcgccaacacttcaccgtctaggtcttcaa
gcatttgaacctattctgattgaaggtaaagcgatccgtcttcacccgttagtttgtgcg
gcatttaacgccgacttcgacggtgaccaaatggcggtacacgttccattaacacttgaa
gctcaattagaagctcgtgcgttaatgatgtctacaaacaacatcttgtctccagcgaac
ggtgagccaatcatcgtaccttctcaggacgttgtcttgggcttgtattacatcacgcgt
gatgcaatcaatgccaaaggtgaaggcatggtgtttgcggatactgacgaagtaaaccgt
gcacttgcaacgggtcaagttgatctacatgcgcgtgttaaagcacgtgtgcatcaaaca
gtaattgatgaaaacggtaaccgtgagcatcaaacgattgttgtagacacaacacctggt
cgttgtttgctttgggaagttgtacctgaaggtatggatttccaacaaatcaacgttgag
atgacgaaaaagaacatctctaagattattaactcttgctaccgtaaattaggtttgaaa
gatactgttatctttgctgaccaattgatgtacttgggtttccgtcaagcaactcgttct
ggcgtttcggtgggtatggaagacatgcttattccaccaaacaaagaagcgattattgcg
aaatcagaagctgaagttcgtgaaatcgaacaacagtttgaacaaggtttcgtaactgcc
ggcgaacgttataacaaagttgtcgatatttgggcgcgtacaaacgaccaagtagcgaaa
gcgatgatggacaacttgtcttacacaactgttaaaaacaaacagggtgaagacgagaag
caaaaatcattcaactcgatctatatgatgtctgactcaggtgcccgtggttcggcagct
cagattcgtcagttagcgggtatgcgtggtttgatggcgaaaccagatggttcgatcatt
gaaacaccaattaaagcaaacttccgtgaaggtttgaccgtacttcagtacttcatttca
acacacggtgcgcgtaaaggtttggccgatacagcattgaagactgcgaactctggttac
ttaactcgtcgtttggtagacgttgcacaagacttagtcattactgagcctgattgtggt
acgtttggcggtctagtaatgactccattcattcaaggtggcgacgttatcgagaactta
ggtactcgagtattgggtcgtgtacttgctgaagatgcgaagaaaccaggttctgatgac
gtgattcttccacgtaatacgctcattgatgaaaaacttgcaaactacttagaagagcaa
ggtgtcgatgaagttaaagtacgttcagttgtaaactgtgaatcgactttcggtgtgtgt
gcgaaatgttacggtcgtgacttggcacgcggtcacttggtaaacccaggtgaatctgtg
ggtgtaatggctgctcaatcaattggtgagccaggtacacagttaacaatgcgtacattc
cacgtgggtggtgctgcaagccgaacttctgctgccaacagcatccaagtacgtaacaaa
ggtacagtacgtttccacaatgtgaaaacagtacaacacgcaaaaggccacttggtatcg
acatctcgttcaggtgagatcggtattgcggatgacatcggtcgtgaacgcgaacgttat
aaaatcccttacggtgcatcaatcatcattaaagatggtgagtcagttgaagcaggcggt
atcgttgcaacttgggatccgcatacacatccacttgttacagaattcgcgggtaaagta
cgtttcagccaaatcgctgatggcgtaactgttacttcgaaaactgatgatgcaacaggt
atgaccactatcgaaatcttgccagtgacttcacgtcctgcgtcaggtaaagatatgcgt
ccggcagttgtattggatcaggcagatggttctgaacagttctacttcttgccacaaaac
accatcctaactgttcgcgatggcgaaacaattggtgtgggtgacgttattggtcgtgta
ccgcaagaatcttcacgtactcgtgatattaccggtggtttgccacgtgtagctgacttg
ttcgaagcgcgtaaaccaaaagagcatgcaattcttgctgagatttcaggtgttgtaagc
tttggtaaagaaactaaaggtaaaaaccgtttagtaattactccggatgatggttctgag
atctacgaagagcttattccgaaatggcgtaccattaacgtgttcgaaggcgaacatgtg
aaccgtggtgaaacgatttctgatggtccacaaaacccgcatgacattttacgtctgaaa
ggcgaagtggcattgaccaactacatcgtgaacgaagttcaagacgtatatcgtctccaa
ggtgtaaaaatcaacgacaagcatattgaagttatcgtacgtcaaatgcttcgtaaagtt
gatatcactgacggcggtgatacaagcttcattaaaggcgaacaagtggattacatccgc
gtgatgggcgagaaccaagctgttcttgcacaaaacaaattccctgcgaagtttgaacgt
caattaatgggtatcacgaaagcatcgctttctactgactcgttcatctctgctgcatcg
ttccaggaaacaactcgtgtgttaactgaagctgctgtaacaggtaaagaagatgattta
cgtggtctgaaagaaaacgttgttgtgggtcgtctgatcccagcgggtactggtcttgct
taccatttagaacgtcgtcgtcaagaagcagaagctgcagagcttgagcttcacaatgac
ttctctgatgtagatcaagcgttaagccaagcatttagtgatgaatttaacggtctttaa
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