Athene cunicularia (burrowing owl): 113476516
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Entry
113476516 CDS
T05777
Symbol
PABPC1
Name
(RefSeq) LOW QUALITY PROTEIN: polyadenylate-binding protein 1
KO
K13126
polyadenylate-binding protein
Organism
acun
Athene cunicularia (burrowing owl)
Pathway
acun03015
mRNA surveillance pathway
acun03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
acun00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
113476516 (PABPC1)
09123 Folding, sorting and degradation
03018 RNA degradation
113476516 (PABPC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acun03019
]
113476516 (PABPC1)
03041 Spliceosome [BR:
acun03041
]
113476516 (PABPC1)
Messenger RNA biogenesis [BR:
acun03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
113476516 (PABPC1)
mRNA cycle factors
Stress granule specific factors
113476516 (PABPC1)
Spliceosome [BR:
acun03041
]
Complex C
Other components
Complex C specific factors
113476516 (PABPC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
MLLE
RBD_DEAH11
RRM_5
RRM_10
RRM_occluded
RRM_7
RBD_RDR6
RRM_3
YflT
Motif
Other DBs
NCBI-GeneID:
113476516
NCBI-ProteinID:
XP_026698004
LinkDB
All DBs
Position
2
AA seq
601 aa
AA seq
DB search
MKTCTSSAICVLIKITLAFPTXFHNAFPAERALDTMNFDVIKGKPVRIMWSQRDPSLRKS
GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIE
KMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGP
ALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTEL
KRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFG
FVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPV
INPYQPAPPSGYFMAAIPQTQNRAAYYPTNQLAQLARPSPRWTAQGARPHPFQNMPGAIR
PAAPRPPFSTMRPASSQVPRVMSTQRVANTSTQTMGPRPAAAATAATPAVRTVPQYKYAA
GVRNPQQHLNTQPQVAMQQPAVHVQGQEPLTASMLASAPPQEQKQMLGERLFPLIQSMHP
TLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEAAQKAVNNPTGVPS
V
NT seq
1806 nt
NT seq
+upstream
nt +downstream
nt
atgaagacttgtacttcaagtgctatttgtgtgcttattaagataactttagcatttcct
actnaattccataatgcttttccagctgaacgagctttggataccatgaactttgatgtc
attaaaggcaaaccagtacgcatcatgtggtctcagcgcgatccatctctacgcaaaagc
ggtgtaggaaacatcttcatcaaaaacttggacaaatcaattgataacaaagctttgtat
gacacattttctgcttttggaaacatcctatcttgtaaggtggtgtgtgatgaaaatgga
tccaagggttatggatttgtacattttgagacacaagaagctgcagaaagagctattgaa
aaaatgaatggtatgctgcttaatgatcgcaaagtatttgttggaaggtttaaatctcgc
aaggaacgtgaggcagagcttggagccagagcaaaggaattcaccaatgtttacatcaag
aattttggagaagacatggatgatgaaagacttaaggaactctttggcaagtttggtcct
gccctaagtgtgaaagttatgactgatgagagtggaaaatccaaaggctttggcttcgtt
agttttgaaagacatgaagatgcccaaaaagctgtagatgagatgaatggaaaagagctc
aatgggaaacaaatctacgttggccgggctcagaaaaaggtggaaagacagacggagctg
aagcgcaagtttgaacaaatgaagcaggacaggatcaccagataccagggtgtaaacctt
tatgtgaaaaatcttgatgatgggattgatgatgagcgtcttcgaaaagaattctcccca
tttggtacaatcactagtgcaaaggtcatgatggaaggtggccgcagcaaaggatttgga
tttgtatgcttctcatcaccagaagaagccaccaaagctgtcacagaaatgaatggtaga
attgtggctactaaaccattatatgtagctctagcccagcgtaaagaagagcgccaagct
catctcaccaaccagtatatgcagagaatggcaagtgtaagagcagtacctaatcctgta
atcaacccttaccaaccagcacctccttcaggttactttatggcagctatcccacagact
cagaaccgtgctgcatactatcctactaatcaacttgctcaacttgctagacctagtcct
cgctggactgctcagggtgccagacctcatccattccaaaacatgcctggtgctatccgc
ccagcagcacccagaccaccatttagtaccatgagaccagcttcttcacaagttccacga
gtcatgtcaacgcaacgtgttgctaatacatcaacacaaacaatgggtccacgtcctgca
gcagcagctactgcagctactcctgctgtacgcacagtaccacaatacaaatatgctgca
ggtgttcgtaatcctcagcagcatcttaatacacagccacaggttgctatgcagcagcct
gctgtccatgtgcaaggtcaggaacccttgactgcttccatgttggcttctgcccctcca
caagaacaaaagcagatgttaggtgaacgtctatttcctctcattcaaagcatgcaccct
actctggcgggtaagatcactggtatgttgttggagattgacaactctgaactcctccac
atgctcgagtctcctgagtctcttcgttcgaaggttgatgaagctgtagccgtactacaa
gcccaccaagctaaagaggctgctcaaaaggcagttaataaccctactggagttccaagt
gtttaa
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