Athene cunicularia (burrowing owl): 113478669
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Entry
113478669 CDS
T05777
Symbol
PNLDC1
Name
(RefSeq) poly(A)-specific ribonuclease PNLDC1 isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
acun
Athene cunicularia (burrowing owl)
Pathway
acun03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
acun00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
113478669 (PNLDC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acun03019
]
113478669 (PNLDC1)
Enzymes [BR:
acun01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
113478669 (PNLDC1)
Messenger RNA biogenesis [BR:
acun03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
113478669 (PNLDC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
113478669
NCBI-ProteinID:
XP_026701864
LinkDB
All DBs
Position
3
AA seq
546 aa
AA seq
DB search
MALVCSRMASAERLGFKTGSRGWEASRLCGAGCGSGGSGSLDMEFTGLYSTFSQNNEPSL
FDSPAERYLKARQSVQRFTVTQLGLAIFSNENSNEYVVHSYNFFLFPSTLGVTDVEFNLS
ASSIQFLSHYGFDYNKFLKDGIPYMNEVQEKILSQHLLAGSWKVSSALDRDMLKKAVDEV
TSWITAAEEEETMILQDLSGFQVFEVQLVLRQALQNVWTQPLGDKKVMVKKVSPQRRQLL
ENSPYDCCQKELILLSARGFTNLFQTLVKAKKPLVGHNMLMDLMHLHDKFYKPLPESYDE
FKRNIHNLFPVLIDTKTVTKSIWKKYLFPRVSNLSEVYAVLCSSNLNPREPPGPVIALAS
DCAKYAEKKSPHEAGYDAFLCGSVLLKSAHLLLYRSTDDAVEADHSFSQYLTVLAEYLNK
VNFIRGGVSSINFSGEDPPCHYPPLLVVHVQGWPGLNERQIYQEFKALCRFDVRRLSKNQ
FILLASKFKHVRLVLRDYKHHPHLRISVYRHWRHSPLVNCLLQVSGIVALWSLLAFVLGG
APRCSF
NT seq
1641 nt
NT seq
+upstream
nt +downstream
nt
atggcgctggtgtgcagtagaatggcgagcgctgagagactgggttttaaaacgggcagc
agaggttgggaagcgagccgcctgtgcggtgctggctgcgggtcggggggctcagggtcc
cttgatatggagtttactggtttatattcaactttctcgcaaaataacgagcccagcctc
tttgattctcctgcggagcggtacctgaaggccaggcagagtgttcagcgtttcactgtt
actcagcttgggctggcaatattctcaaatgaaaattcaaacgagtatgtcgtgcattca
tacaacttttttctctttccctcaacactgggagttacggacgtcgaatttaacctctct
gcatctagcattcagttcctttctcattatggctttgactataataagttcctcaaagat
ggaatcccatacatgaatgaggtacaggagaagatccttagccagcatctcttagcaggt
agctggaaagtcagcagtgccctggacagggacatgctgaagaaagctgttgatgaagtg
accagttggataactgcagcagaggaggaggagactatgattctgcaggatctgagtggc
tttcaggtgtttgaagttcagctggttctgagacaggctctccaaaatgtttggacacag
cctcttggagacaagaaggtaatggtgaaaaaagtgagtccacagcgtcgtcagcttctg
gagaactctccttatgactgctgccagaaggagctcattctcctgtctgcccggggcttc
actaacctcttccagacacttgttaaagccaagaagcccctggtaggacacaacatgctt
atggaccttatgcatcttcatgacaagttctacaagcctcttccagaaagctatgatgag
tttaaaaggaacattcacaacctgtttcctgtcctcattgacaccaagactgtaacaaaa
tccatctggaagaaatatctgtttcctcgagtatctaatctctctgaggtgtatgcagtt
ttgtgcagcagcaacctaaatcccagagaaccaccaggcccagtgatagctcttgcaagt
gactgcgcaaaatacgctgagaagaaatctcctcatgaggcaggctatgatgcgtttctc
tgtggttcagttcttctgaagtcagctcatttactactgtacagatccacagatgatgca
gtggaggctgatcattctttctctcagtatctcaccgtgttagctgagtatctgaacaaa
gtgaatttcatccgaggtggtgtttccagcattaatttttctggggaagatcctccctgc
cattatccccctctcttggttgtccatgtccaaggctggccagggctgaatgaaaggcag
atttaccaagagtttaaagctctttgtcgctttgatgtcagacggctttcaaagaatcag
ttcattctacttgccagtaaatttaagcacgtcaggcttgttctgcgagattataagcat
caccctcatctccggatttccgtctatcgccactggaggcactccccactcgtgaactgc
ctgctgcaagtctctggtattgtggcgctgtggtctctcttggcctttgtacttggagga
gctcctcgctgttcgttctga
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