Athene cunicularia (burrowing owl): 113483398
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Entry
113483398 CDS
T05777
Symbol
XRN1
Name
(RefSeq) 5'-3' exoribonuclease 1 isoform X1
KO
K12618
5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
acun
Athene cunicularia (burrowing owl)
Pathway
acun03008
Ribosome biogenesis in eukaryotes
acun03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
acun00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
113483398 (XRN1)
09123 Folding, sorting and degradation
03018 RNA degradation
113483398 (XRN1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acun03019
]
113483398 (XRN1)
03009 Ribosome biogenesis [BR:
acun03009
]
113483398 (XRN1)
03016 Transfer RNA biogenesis [BR:
acun03016
]
113483398 (XRN1)
03036 Chromosome and associated proteins [BR:
acun03036
]
113483398 (XRN1)
Messenger RNA biogenesis [BR:
acun03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
113483398 (XRN1)
mRNA degradation factors
5'-3' decay
5' exonucleases
113483398 (XRN1)
Ribosome biogenesis [BR:
acun03009
]
Eukaryotic type
Pre-60S particles
RNases
113483398 (XRN1)
Transfer RNA biogenesis [BR:
acun03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
113483398 (XRN1)
Chromosome and associated proteins [BR:
acun03036
]
Eukaryotic type
Gene silencing
piRNA pathway
113483398 (XRN1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_M
XRN_N
XRN1_D2_D3
XRN1_D1
SH3_12
Dicer_dimer
Motif
Other DBs
NCBI-GeneID:
113483398
NCBI-ProteinID:
XP_026710731
UniProt:
A0A663N3X1
LinkDB
All DBs
Position
9
AA seq
1735 aa
AA seq
DB search
MNGIIHQCSHPNDDDVHFRISEDKIFADIFHYLEVLFRIIKPRKVFFMAVDGVAPRAKMN
QQRGRRFRSAKEAEDKIKKALEKGETLPTEARFDSNCITPGTEFMARLHEHLKYFVNMKI
STDKSWQGVTVYLSGHETPGEGEHKIMEFIRSEKAKPHHDPNTRHCLYGLDADLIMLGLT
SHEAHFALLREEVRFGGKKSQRACAPEETTFHLLHLSLMREYIDYEFSPVKDKISFEYDI
ERIIDDWILMGFLVGNDFIPHLPHLHINHDALPLLYRTYMAILPELGGYINENGHLNLKR
FEKYLTRLSDFDREHFSEVFVDLKWFESKVGNKYLNEAAGIAAEEARKNKQKKQKAQENS
ICLAALEKNEGEATPKTVLEDEPDDDDLFETEFRQYKRTYYMTKMGVEVVSDDFLADQSE
CYVQAIQWILHYYYHGVQSWSWYYPYHYAPYLSDIRNISELKIKFELGKPFMPFEQLLAV
LPAASKDLLPKCYQHLMISQDSPIIEYYPLDFKTDLNGKQQEWEAVVLIPFIDEKRLLQA
MESCNKCLKEEEKQRNTHSACLMYWYDKDAEFQYLSPWPEKFPAVERCHTRYKTIPLDAW
LVEITHNKITKINKSALYFCGFPTLKHIKHKFYLRKSGVQVFQQSSHGENMMLEITADEN
SKEQLVENVASLVLGKRVFVNWPHLEEARVVAVSDGETKLYLEEPHGTQKLYMGNAVPPT
KVAYIGDKEQSIWLKEVQGISEQYQRRKGIIIHETSIVVYAQLLTGNRYQLNQNGEVYLE
KQWSKQVLPFVYQTVVKDIKAFDSRFSNIKTLDDLFPPGSTAFMLGSPYYGCMGEVQDSR
DVITEGRIRVVFNIPCEPQLDPLIQNQHKYSVKYNPAYILASRLGVSGYLVSRFTGSIFI
GRGSKKNPHGDHKANVGLNLKFNKKNEEVPGYTKKVGNEWMYSSAVEQLLAEYLERVPEL
FNYIAKNSQEDIFYEDDIWPGEDEISAEKVQEIVAWLKAHPVSALSRSSCDLQILDAAIV
EKIEEEIEKCKQRKSNKKVRVTVKPHLLYRPLEQQNGVVPDRDAEYRLFDRVVNVRENFS
VPVGLRGTIIGIKGASRETDVLFEVLFDEEFLGGLTIRCSPARGYRLPSSALINLSHGSR
SEMGNQKLMAIVKPQPAVNNYNSYASDLSSVCSQKVHLGGLNHSPRSLFVPTQQLNGRQH
YNLRAENQGNSNSPQKGSFLSGNQKNKAQSKQDDEFCSIWQSLQSSGKSHHTQQNMHEKG
AVLPQEIKLGTGNQFYKPGFNDSSFKGQQRKQDPYKKFKEDSKVTRGESQPHNKIPNKQN
FAGVNKYNVKLLKRNESPNIAVNQKAAVDGPCTGGKKDNELESLLASLKISKENEVQTYS
KEARVTNEEHLSPQSFAMKGTQMLKEILKIDGSDLETRNEMKSQVNDVPAPPRQDCHGAA
LQYRQAKKLAAYMNKPHSIGGPQNTPALEAGGHPFACPQPALSTVSELSRICSLVGMSQP
DFSFLKTPQTMTVCHIKLSNGLLVHGPQCHSEAEAKEKAALFALQRLSSIGVNFPLPPPP
PPPVFPNYQPLGVPVPPGSISPVFAQAPANIMPPSPHMFGPVSWGAPVPKHYYPGSYPGN
VSLAGTIPVGSHNQFIPLQVTKKRAASKKNFELKEFQSSPQAAPLKNEQPVSSDHIQQDS
SSAPLKSPQAAQSTVSFQDSVATPSVPHNKSTPNTSSKRKPRKLAVNFGAPKSSQ
NT seq
5208 nt
NT seq
+upstream
nt +downstream
nt
atgaatggcattatacatcagtgttcacatccaaatgatgatgatgttcacttcagaatc
tcagaagataagatttttgctgatatttttcactatttggaagtactgtttcgcattatt
aaaccaaggaaggttttcttcatggcagttgatggagtagctccaagagcaaaaatgaat
cagcagcgtgggagacgttttagatcagcaaaagaggcagaagacaaaataaaaaaggcc
ttagaaaagggagaaactctccctacagaagccagatttgattccaactgtattacacca
ggaactgaattcatggccagattgcatgagcatcttaaatattttgtaaatatgaagatt
tccacagacaaatcctggcaaggagtaacagtctacttatcaggccatgagactccgggg
gaaggtgaacataagattatggagttcatcagatcagaaaaagccaagccccatcatgat
ccaaacacaagacactgtctctatggcttagatgctgacttgattatgctgggattaaca
agtcatgaggcacactttgcgctcctaagagaagaagtcagatttggtggtaaaaaatct
caaagagcgtgtgcaccagaggaaaccacatttcatttactgcacttatcactgatgaga
gaatatattgattatgaattttcaccagtaaaagacaagatttcctttgaatatgatatt
gaaaggataatagatgattggatcttaatgggtttccttgtaggaaatgattttattcct
catctacctcatttacacattaatcatgatgcactgccgctactttatagaacatacatg
gctatcttgccagaactgggagggtacataaatgagaatggacatttgaatttaaaacgc
tttgagaaatatctcacaagattgtcagactttgatcgtgaacacttcagtgaagtcttt
gtagacctaaagtggtttgaaagtaaagtaggcaataaatacctcaacgaggcagctggt
attgcagcagaggaagccagaaaaaacaaacaaaagaaacaaaaggctcaggaaaattca
atatgtttggctgctttagaaaaaaatgaaggtgaagcaacacctaaaactgttttggaa
gatgagccggatgatgatgatctgtttgaaactgagtttaggcaatacaaaagaacttac
tacatgactaaaatgggtgtagaagtagtttctgatgacttcttggctgatcaatcggaa
tgttatgtccaggcaatacagtggattttgcattattattaccatggagttcaatcatgg
agctggtattatccttatcattatgcaccttatctgtcagatattcgcaacatcagtgaa
ctcaaaatcaaatttgaactgggaaaacctttcatgccatttgaacagcttcttgctgta
cttccagcagctagcaaagacctgctacctaaatgctaccagcatttgatgattagtcaa
gactctcctattatagaatattatccactggattttaaaacagacctaaatggaaaacag
caagaatgggaagctgtagtattaatcccgtttattgatgagaaacgactgctgcaggcc
atggagtcctgtaataaatgcctaaaagaagaggagaaacaaagaaatactcacagtgct
tgcttaatgtactggtatgacaaagatgcagagttccagtacctgtcaccatggccagag
aaattccctgcagtagaaagatgtcatacgaggtataaaacaatacctttggatgcttgg
cttgtagaaataacgcacaataagataactaaaatcaacaagagtgcattatatttttgt
ggatttcccactttaaagcacattaaacataagttctatcttagaaaaagtggtgtacag
gtgtttcagcaaagcagccatggagagaacatgatgttagaaattacagctgatgagaac
tcaaaagagcagctggtagaaaatgttgccagtttggtacttggaaagcgtgtttttgtt
aactggccacacctcgaagaagccagagttgttgctgtgtcagatggagaaactaagctt
tatttggaagaaccacatggcacacagaaactttacatgggaaatgcagtgcccccaact
aaagtggcgtacattggagataaggaacaaagtatatggttaaaagaagttcaaggcatt
tcagagcagtaccagagaagaaaaggaataattattcatgaaacatcaatagttgtatat
gctcagttactcactggtaataggtatcagctaaaccaaaatggagaagtttatctggag
aagcagtggtcaaaacaagttcttccttttgtttaccaaactgttgtcaaggatatcaaa
gcatttgactctcgtttttcaaacatcaaaactttggatgatttgtttcctcctggaagt
acagcctttatgctgggatctccttactatggctgcatgggagaagttcaagattcacgt
gatgtgatcacagaaggtagaattcgtgtagttttcaatattccatgtgaacctcagctt
gatcctttaatacagaaccagcataaatattctgtgaaatacaatcctgcatatattttg
gccagccgtcttggagtaagtggatatcttgtctccagatttacagggagtatctttatt
ggaagaggatcaaagaaaaatcctcatggagatcacaaagcaaatgtggggctaaacctg
aagttcaataagaaaaatgaagaagtacctggctatactaagaaagttggaaatgaatgg
atgtattcttctgcagtagaacaattacttgctgagtatttagaaagggtccctgaacta
tttaattatatagccaagaacagccaagaagatatcttctatgaagatgacatttggcct
ggagaggatgagattagcgctgagaaagttcaagaaattgttgcctggttaaaggcacat
cctgtgtctgctctgtctcgctcatcttgtgacttgcaaattttggatgcagccattgtt
gagaaaattgaagaagaaatagagaaatgcaagcaaagaaagagcaacaagaaggtgcga
gtaactgtgaaaccccatttgctgtacagaccattagaacaacagaatggggttgttcca
gatcgagatgcagagtataggctgtttgaccgtgttgtcaatgtgagagagaacttttcc
gttccagttggtcttcgaggtaccattataggaattaaaggagccagtagagaaacagat
gtgctctttgaagttttgtttgatgaagaattccttggaggcctaacgataaggtgctcg
cctgccagaggttatcgtctgccatcaagtgccttaatcaacctgtctcatggtagtcgg
tcagaaatgggaaatcaaaaactgatggccatagttaaacctcagccagctgtgaataac
tacaattcatatgcatctgatttgtcatctgtatgctcacagaaagtgcacctgggaggc
ctcaaccattctcctcgctccctttttgtccctactcaacaactgaatggaagacagcat
tacaatctcagggctgaaaatcagggcaactctaactcaccccagaaaggatcatttctg
agtggtaatcagaaaaataaagcacagagtaagcaagatgatgaattctgcagcatatgg
caatcattgcagagttctgggaagtctcaccacacccagcaaaacatgcatgagaagggt
gcagttctacctcaggaaatcaagctgggaactggcaatcagttctataagccaggtttc
aatgacagcagctttaaaggtcagcagagaaaacaggacccttataaaaaatttaaagaa
gattccaaagtaacaagaggtgaaagtcagccacataataaaataccaaacaaacagaat
tttgcaggtgtgaataagtataatgttaaacttttgaagaggaatgaaagtcccaacata
gctgtaaaccagaaggctgcagttgatggtccctgtacaggtggaaagaaggacaatgaa
cttgaaagccttctagcttctttgaaaatttccaaagaaaatgaagtacagacttactcc
aaggaagcaagagttacaaatgaagaacatctgtcaccacagtcatttgctatgaagggg
acacagatgctcaaagagattttgaagatagatggatctgacctggaaacaaggaatgaa
atgaaatcccaagttaatgatgttcctgctccccctagacaggattgccatggagctgcc
ttgcaatatagacaagcaaaaaaattggctgcttatatgaataagcctcatagcattgga
ggccctcagaacacaccagcactggaagctggaggtcacccttttgcttgtccacagcct
gcactgtctactgtttctgaactttctcgtatttgttctcttgttggaatgtcacaacca
gatttctccttcctaaaaacaccacagaccatgacggtttgtcacataaaattatcaaat
ggtttgttggttcatggaccgcagtgtcattctgaagctgaagcaaaggagaaagctgca
ctttttgctttacaacgtttgagttctataggagtaaacttccctttgcctccacctccg
cctccaccagtgtttccaaattatcaaccactaggagttcctgtaccacctggatctatt
tctccagtatttgcacaagcccctgctaatataatgcctccatcacctcacatgtttggt
ccagtgtcctggggagctccagtgcctaaacattattatcctggctcctatccaggaaat
gtgtctcttgcaggaactataccagtgggttctcacaaccagtttatacctctgcaggta
actaaaaaaagggctgctagcaagaaaaactttgagctcaaggagtttcagagttcccct
caagctgcaccactaaagaatgaacagccagtgtcttctgaccacattcagcaagatagt
tcttcagctcctttaaaatctcctcaagctgctcaatccacagtttcatttcaagacagt
gtggctactccaagtgttcctcataacaaatcaacaccaaacacttccagcaagcgaaag
ccaagaaagctggctgtcaattttggcgcaccaaaatcttcacaataa
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integrated database retrieval system
