Athene cunicularia (burrowing owl): 113486516
Help
Entry
113486516 CDS
T05777
Name
(RefSeq) collagen alpha-1(XXVII) chain-like isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
acun
Athene cunicularia (burrowing owl)
Pathway
acun04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
acun00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
113486516
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
acun00536
]
113486516
Glycosaminoglycan binding proteins [BR:
acun00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
113486516
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_3
GH131_N
Motif
Other DBs
NCBI-GeneID:
113486516
NCBI-ProteinID:
XP_026716325
LinkDB
All DBs
Position
17
AA seq
1747 aa
AA seq
DB search
MEPESEPVSRLRATAAGRGGFCFLWTVLCFTWFLGFTQGNSEDIDVLQRLGLSGKRPSGG
WSSSRTVPQGVIPFKSGVIFTQRARVEAPVSTILPTGSSTDLLLVLSLCSHRINNAFLFA
VKSKKKKLQLGVQFVPGKIIVYVGHKRSVYFDYNVHDGQWHNMAINIRGQTVTLFTSCGK
RRVHADLHFKKDEALDPHGSFLFGKINQHSVQFEGAICQFDIYPSAKAAHHYCKYLKKQC
RQADTYRPNLPPLIPLLPRDPSAPPSTPQHMEPSLQGLKNLTTAAPSLESGRVTAPLKTR
GSGATTTALVSSPPSLPRLTTKATKVTVAPSPVPSSTETQPPTRSLPQGTVTTLRVSRPT
PSTRMEKTPLPTAKKAPPTSQSPAMASRKESQQETKNKIHQKPTTEPSEAPSTVKPTRRM
TDNTTSNIHFVTLKQTLQNPNSGPVPKKHVPSPTRKVDPSNVPLVYTKPPLGSARPASRA
RAQAFNLTTPAATDSYQIFDPLGPTPFPFLLGYPGVKGERGPQGPPGLPGLPGPPGKRGS
RGPPGPHGNPGSPGPPGLKGQKGDPGLSPGKARNGQKGDVGLPGLTGFPGPPGRKGYKGY
PGPPGHPGDQGERGPDGSPGAKGYPGRQGLPGPIGEAGPKGSRGYIGLPGLFGLPGADGE
RGIPGVPGKRGKMGRPGFPGDFGERGPPGIDGNPGELGAPGPPGVLGLIGDMGSVGPIGY
PGPKGLKGLMGNPGEHGLKGDKGDQGGAGVPGDVGFQGDKGSQGLPGVPGARGKAGPLGK
VGDKGPVGFPGPPGPEGFPGDIGPPGENGPEGLKGKPGARGLPGPRGLPGQEGDEGPLGP
PGVPGPEGRSGRKGFSGRPGPDGPKGEPGNHGRPGKVGEQGLMGFIGPVGEPGIVGEKGD
RGSVGPPGPPGVKGSMGHPGTPGGVGFPGIPGPTGPAGVRGAPGIRGMKGRRGARGPDGP
VGELGSRGVKGRPGEPGKLGPDGQQGKMGETGETGARGFPGIQGPSGPPGTKGAPGDPGP
QGPQGPPGPLGEIGHKGPPGSMGQPGLAGEPGMKGDPGQLGVPGEQGLIGQRGESGLEGD
SGPPGPDGIKGDKGEQGLEGEKGEKGNEGQKGKEGPPGYPGITGVRGPEGKPGKQGEKGK
PGQKGSKGYQGQLGETGSPGKEGPKGNQGPKGSRGTLGPMGAPGRMGTQGEPGLKGYQGH
AGPPGPIGPPGPKGEKGEQGDDGKVEGPQGPPGDRGPVGDRGDRGEPGDPGYPGQEGLDG
ERGKPGQQGLPGDPGPPGQPGAKGSKGDVGQKGKQGARGNSGSRGSPGILGLPGPRGVVG
RQGQEGAPGVDGVPGKDGVPGVLGEQGDDGEEGVTGMSGKRGNPGIPGLPGAQGPPGFKG
ERGLPGQTGQTGKRGSSGGTGLPGSPGDPGPKGQPGDFGEAGFPGIAGMFGPKGPPGDLG
FKGIQGPRGPPGLMGKEGIIGPLGIQGPTGSPGPKGDKGSRGEMGLQGPRGPPGPRGHPG
PPGPPGIPASFQQDSFGAAFQTLIDSNTALKTEGYQHPDLLMLDHGGEIFKTLHYLSNLI
QSIKRPLGTKENPARICRDLMNCEQKMNDGTYWIDPNLGCSSDTIQVICNFTNGGQTCLS
PVTVSKLDFDIGRVQMNFLRLLSSEVVQHITIHCLNTSVWREGSSEKPSEKAVRFRAWNG
QMFEADGQLRPEVAADDCKIKDGRWHRTLFSFRTQDPQQLPIVNIYNLPPSEPGKQYHLE
VGPVCFL
NT seq
5244 nt
NT seq
+upstream
nt +downstream
nt
atggagccggaatcagagccggtctccagactcagagctacagcagcaggcaggggggga
ttctgctttctctggactgtattatgttttacctggttcctgggattcacgcagggaaat
tctgaagatatagatgttcttcaaagactgggcctgtcagggaagaggccatcgggcgga
tggtcctcatcacgtacagttcctcaaggagtcattcctttcaaatcaggggtcatcttc
actcagcgagcacgtgtcgaagcaccagtcagcaccatcctccccacaggctctagcact
gacctgctcctagtgctgagcctctgctcccaccgcatcaacaatgcctttctctttgct
gtcaagagcaaaaagaaaaaactgcagctgggtgtccagtttgtgcctgggaagatcata
gtatatgtgggccacaagcgctctgtatattttgattataatgtccatgatggccagtgg
cacaatatggccatcaatatccgtggccagacagtcactttatttacttcttgtgggaag
cgcagagtacatgcggatttgcattttaaaaaggacgaggcattggatccacatggatct
ttcctctttgggaagataaaccagcactcggtgcagtttgaaggagccatctgccagttc
gatatttatccttccgccaaggcagctcatcattactgtaaatacctgaaaaaacagtgc
aggcaagcagatacctaccggccgaacctgccccccctcatccccctcctgcccagggat
cccagtgcccccccgagtaccccacagcatatggagccctcgctgcagggtctgaaaaac
ctgaccactgccgccccatccttggagtctggcagggtcactgcacccctcaaaactcgg
ggttcaggtgcaacaaccaccgcattggtatcatccccaccatcactgccaagactgaca
accaaagccacaaaggtcaccgtggccccatctcctgttccatcgagtactgaaacgcag
ccacctacccgttcactccctcaggggacggtgacgaccctcagggtgtctcggcccact
cccagcacacgcatggagaaaaccccccttcccactgccaaaaaggccccgccaacaagc
cagagccctgccatggccagcaggaaggagtcccagcaagagaccaaaaataagatccac
caaaaacccaccactgagccctctgaagcacccagtactgtaaagccaacgaggaggatg
actgataacacaaccagcaacatccacttcgtcaccctaaagcaaacgctgcagaaccca
aacagtgggcccgttccaaagaagcatgtgccgtcccccaccaggaaagtggatcccagt
aacgtccctctggtgtacaccaagccgcccctggggtctgcccgccccgcctccagagcc
agggcacaggccttcaacctcacaaccccagctgccactgacagctatcaaatctttgac
ccccttggacccactccttttccatttttactgggatatccaggagtgaaaggagagaga
ggacctcagggtccaccaggtctgccaggcttaccaggaccacctggaaagagaggttcc
cgaggtcccccaggtccccacggaaaccctggctcacccggccccccaggcctgaaaggt
cagaaaggtgatcctgggctgtcgcctggaaaagctcgcaatggacagaagggagacgtg
ggcttacctggtttgactgggttccctggaccacctggtagaaagggatataaaggctac
cctggaccaccaggtcaccctggagaccagggcgaacgaggaccagatggaagtccaggt
gccaaaggttatcctggcaggcagggtttacctggccccataggggaagctggtccaaaa
ggcagtcggggatatattggtctcccaggattgtttgggctaccaggggctgatggagaa
cgagggatccctggagttcctgggaagaggggcaagatgggtaggccgggttttcctggt
gattttggggaacgaggacctccgggcatcgatgggaacccaggagaattgggagcccca
ggtcctcctggagtccttggactcattggtgacatgggctctgttggaccgataggctat
ccaggaccaaaaggcttaaaggggctgatgggaaaccctggagaacatggactgaaaggt
gataagggtgatcagggaggagcaggtgttccaggagatgtcggcttccaaggagacaag
ggcagccagggtttgcctggggtccctggggcacgagggaaagcgggccccctgggaaaa
gtcggtgacaaaggtccagtcgggtttccaggaccacctggccctgagggcttcccaggt
gacattggcccaccaggagaaaatggtcctgaaggcctgaagggaaagccaggagcaaga
ggtttacctgggccaagaggactgcctggacaagagggagatgaaggacccttaggacca
ccaggagtccctggtccggagggtcgatctggtcggaagggattttcaggaagacctggt
cctgatggtccaaagggggagccaggaaaccatggccgaccagggaaagttggtgagcag
ggtctaatgggtttcattggtcccgtaggggagcctggaatagtgggagaaaagggcgac
cgtggctcagtgggacccccaggccctccaggagtcaaggggtcgatggggcaccctggg
acaccaggaggagtgggttttcctgggattcctggaccaacaggtccagcaggagtccgt
ggtgcgccagggataagagggatgaaaggccgcaggggtgccagagggcctgatggacca
gtaggtgagctggggtcacgaggtgtcaagggccgaccaggggagccaggcaagctgggg
ccagatgggcagcaggggaagatgggagagactggggagacaggagcacgcggcttccca
ggtatccaaggaccttctggacctccaggaacaaaaggggctccaggcgacccgggccca
caaggaccacaggggccacctggacctttgggagaaatcggacataagggaccgcctggc
tcaatgggacaacctggccttgcaggtgaacctggcatgaagggtgatcctggccagttg
ggagtccctggagagcaaggcctcattggccaaaggggagaatcggggctggaaggggat
agtgggccacctgggccggacggtatcaagggagacaaaggagagcaaggcctggaagga
gagaaaggagaaaaaggcaatgaagggcagaagggaaaagaagggcctcctggatatccc
ggcatcacaggtgtccgaggaccagaagggaaaccaggaaaacaaggggaaaagggcaag
cctggccagaagggcagcaagggctaccaggggcagctcggcgagacaggatctccaggg
aaggaggggccgaaggggaaccaaggccctaaaggatcccgaggtaccctgggacctatg
ggtgcgccaggacggatgggtactcaaggggaacctggtttaaagggttaccagggacat
gcaggaccaccagggccaattggaccaccaggaccaaagggggagaagggagagcagggt
gatgacgggaaggtagaaggcccacagggaccacctggagacagaggccctgttggtgac
agaggtgatcgaggggagcctggagaccctggttatcctggtcaagaagggcttgatgga
gaaagaggaaaacctggacagcaaggcttacctggggatcctggaccaccaggccagcca
ggagcaaagggatccaaaggtgatgtgggtcaaaaaggaaaacaaggagcacggggcaat
tcagggagcagaggctcaccgggcatccttgggctaccaggtcctcgaggagtggtggga
aggcagggtcaagagggtgcccctggagtggacggagtgcctgggaaggatggcgtgcct
ggggtgctgggagagcagggtgatgatggggaagaaggtgtgacaggcatgtcaggcaaa
agagggaaccctggcataccaggactccccggggcacagggaccaccaggattcaagggt
gaaagaggattgcctggacagactggccaaacagggaagagaggatcatcaggaggaacg
ggccttccagggagccctggcgacccgggacccaaaggacagccgggagactttggcgag
gcaggatttccagggattgcgggcatgtttgggccaaagggccccccaggagaccttggt
ttcaaaggcattcagggaccacgtgggccacctggtctcatgggaaaagaaggaattatt
ggtccacttggcatccaaggtcccacaggaagcccagggcccaagggagacaaaggcagc
cgtggagaaatgggtctgcaaggtccaaggggtcctccaggcccacgaggacaccctggc
cctccgggaccgccaggaattccagcctcatttcaacaagacagctttggggcagctttc
cagacgctaatcgactcgaacaccgcactcaagacagagggttaccaacatccagacctt
ctcatgctggaccatggaggggagatctttaagactctacactacctcagcaacctcatt
cagagcatcaaaagacccctgggaaccaaggaaaaccctgcacgcatctgtcgagacctc
atgaactgtgaacagaagatgaatgatggtacctactggattgacccaaatcttggctgt
tcctcagacaccatacaggtcatctgtaacttcaccaatggtgggcagacatgtctcagc
cccgtcaccgtctccaagctggattttgacatcggtagagtccagatgaacttcctccgc
ctcctgagctcagaggtggtgcagcacatcaccatccactgcctgaatacctccgtctgg
cgggaaggctcatccgagaaaccttcagaaaaagccgtgcgcttcagggcctggaatgga
cagatgtttgaggcagacgggcagctcagaccagaagtggcggctgatgattgcaagatc
aaggatggacgctggcatcggactctcttttcgtttcggacgcaggaccctcagcagctg
ccgattgtcaacatctacaaccttcccccatccgagccaggaaagcaatatcacctcgag
gtcggccccgtgtgcttcctttga
DBGET
integrated database retrieval system
