Athene cunicularia (burrowing owl): 113488529
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Entry
113488529 CDS
T05777
Symbol
PCF11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
acun
Athene cunicularia (burrowing owl)
Pathway
acun03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
acun00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
113488529 (PCF11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
acun03021
]
113488529 (PCF11)
03019 Messenger RNA biogenesis [BR:
acun03019
]
113488529 (PCF11)
Transcription machinery [BR:
acun03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
113488529 (PCF11)
Messenger RNA biogenesis [BR:
acun03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
113488529 (PCF11)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PCF11_RFEG_rpt
PCF11_charged
Pcf11_helical
Pfc11_Clp1_ID
Pcf11_C
zf_PCFS4
CID
SHOCT
DUF6980
Motif
Other DBs
NCBI-GeneID:
113488529
NCBI-ProteinID:
XP_026719604
LinkDB
All DBs
Position
1
AA seq
1670 aa
AA seq
DB search
MYLMDSIVKNVGREYLTAFTKNLVATFICVFEKVDENTRKSLFKLRSTWDDIFPLKKLYA
LDVRVNSLDPAWPIKPLPPNVNTSSIHVNPKFLNKSPEESTAPTSAVTSGASTPPAVPEI
QKNLTQEQLIRQQLLAKQKQLLELQQKKLELELEQTKAQLAVSLSVQQGSSTIASVPAPS
KQHVSPTPHMTVKPPHQTAVQSEKNKPSPSPPLHDIKIVNRDPRLNRMAQHSSHTKDQSH
RKEFPPNTTSQSDTKANKTTQAEKQNSKQEKLKASEKTQKKELDQSEAKSKSPSPLKNKI
PNTKDTKTQECESTKVSEISKRDPRLKRHLQDKSEGKEEEIKEKRRNIEKKEKEEHKTCE
HRPVGSRNKVINGAVQKQDTNTEESEKQGGKQGRSSGRKRSRSRSPKARSPSTHSPKRRE
RRSPKRRLRSLSPTSSAPKIGKIRQIGPKQSHVEEGTQAARDERNSNKRNVKQEVRDPRR
VKKAQEDRPQEAASQHSTKASPDPKENAENWQGSKSGKRWKSGWEENKNSQQNEEHQALG
KSPHQRHRENWPNSKGILSPRAPKQQHRLSVDANLQIPKELTSASKRELLKKANERLTSG
EITQDEFLMVAHQIRQLFQYQEGKHRCSVWDSPTEEKCGLKKKPLLSDAELTYYEHKAKL
KRTQVQHSLSRLDLLDPDDILEYHIPDSLLSGIECEQAKAKRGVQFDRKEPFGERSRRHS
PVSGTNRPFADNLSPLESRRRLEEQNSTKGARGSKNFDPYDSWGESDEFRDTLRQQGKST
TEFQKIDGDAICRFDNREERQLLGQAGVREEPRSPFSERFKRARYEDPEKAPFPESPGSR
FGGIEAKQRISALMEDRPLFDGSPRQAASRVGVDGQGSPFVDGAAAGSSSRIDGPPGQAA
MRFEGPLVGAGASQFDGPLAGAGGAGALRFDGPPGQLAGGLRFEGPPGQVGGGGPLRFDG
PLGQIGGSLRFEGPAGQPVGSPRFEGTGVGLKFEGPRGQPSGVLRFEGLHGQPMGPRGQP
GGVLRFEGHHGQPLGPHGQPGGGLRFEGSHLQPLGPHGQPGGGLRFEGQHGQPMGPHGPS
GAGLRFDGPHGPSGAGLRLEGPHGQPGVGPRLIDGPVHQGAGGHRFDGPLGRAGPRFDGC
HAAAFDGQPGQLPLLQRFDGIHGQPGPRFERTPGQQAQPRFDTAIPQRFDGPHQPASRFD
LPLGLQGARFENVANHPASRLEMSPYGQGGPFVEHPGQGYNGPSHGMPFQRPDIFDGSPG
SNFNGPAGPGAQNFPLRPAGHYFDEKTLQGPQYGNFNNMPLGSNQRLSWFESGQQPNTMQ
QLAHPPLSWGMGKRIRGVKVPLMSAQPGPYGQGQQYLPNPGSFVQNPAGALPHSYPDNHL
GQLDVNELFAKLLSTGILKLSKTDSTSAQVNETSAQPAAEEEDDDQNEDQNVPDLTNFIV
EELRQRYDSVINRLYTGIQCYSCGMRFTTSQTDVYADHLDWHYRQNRTEKDVSRKITHRR
WYYSLTDWIEFEEIADLEERAKSQYFEKVNEEVVLKTQEAAKEKEFQSVPAGPAGAVESC
EICREQFEQYWDEEEEEWHLKNAIRVDEKIYHPSCYEDYQNTSSFDCTPSPSKTPVENPL
NIMLNIVKQETQESCDSPKVKEEPDDTPTACAEESTPASTDIKTEPDESI
NT seq
5013 nt
NT seq
+upstream
nt +downstream
nt
atgtaccttatggattccattgtcaagaatgtgggaagagaatatcttactgcatttact
aaaaacctagttgcaacatttatttgtgtatttgaaaaggtggatgaaaatactagaaaa
agtttatttaaattacgctccacatgggatgatatttttcctttgaagaaactatatgca
cttgatgtcagagtcaactcattagatcctgcttggccaattaaacctctgcccccaaat
gtgaatacttctagcatccatgtgaatcctaagtttttaaataaatcgccagaggaatct
actgcacctacctctgctgtcacttctggtgcctctactcctccagctgttcctgaaata
caaaagaatttgacacaggagcaactgataaggcagcaattgcttgcaaagcaaaagcag
ttgttagaacttcagcaaaaaaaattagagctggagctggaacagactaaagcacagttg
gctgtatctcttagtgttcagcaaggatcatctactatagcttcagttccagcaccttcc
aagcaacacgtgtctcccacacctcatatgacagttaaaccacctcatcaaactgctgtg
caatccgaaaaaaataaaccatccccaagtcctccgcttcatgatatcaaaatagtaaat
agggatcctcgacttaatcggatggctcaacattcttctcacactaaagatcaatctcat
cggaaagaatttccaccgaacacgaccagtcagtctgataccaaggcaaacaaaacaaca
caggctgaaaaacaaaactcaaagcaagaaaaattaaaagcaagtgaaaaaacacagaag
aaagaacttgaccagtcagaagcaaaatctaaatcaccatctcctttgaaaaataagata
cccaatactaaagatactaaaacccaggaatgtgaaagcacaaaagtatctgaaattagt
aagcgggatccaagactgaaaagacatcttcaagataagtcagagggcaaagaggaggag
ataaaagaaaagaggagaaatatagagaaaaaagaaaaagaggaacataagacatgtgaa
catagaccagtaggcagcagaaataaagtaattaatggtgctgttcagaaacaagacaca
aatacagaggagtcagaaaaacagggtggaaaacaagggagatcaagtggtagaaagcga
tcacgatcacggtctcctaaggcacggtcaccatctacacattctccaaaaagacgagag
aggagatcacccaaaagacgacttagaagtttatctcccacttcatcagcacctaaaatt
ggaaagatacgtcagataggccctaagcagtctcatgttgaagaaggcacacaagcagca
agagatgaaagaaattctaataagagaaatgttaaacaagaggtgcgagatccgaggaga
gtgaaaaaagcccaagaagacaggcctcaagaagcagcaagccagcattccacaaaagct
tctcctgatccaaaagagaatgcagaaaactggcaaggatccaaatcaggcaagaggtgg
aaatctggttgggaagaaaataaaaactcccagcagaatgaagaacaccaagcacttggt
aaatcccctcaccaaagacaccgggaaaactggcctaatagtaaaggaattttatcaccc
cgagcaccaaagcagcagcaccggttaagtgtggatgccaatttacagattcccaaagaa
ttgacatctgcaagcaagagagagttacttaagaaggccaatgaacgcttaacatctggt
gaaataacacaagatgagttcctcatggtagctcatcagatccgacagctgttccagtat
caggaagggaagcacagatgtagtgtctgggatagccctacagaggaaaaatgtggtttg
aaaaagaaacctcttctgtcggatgcagaattaacatattatgaacataaggctaaacta
aaaagaacacaagtccagcattcattgtcaaggcttgatctgttggatccagatgatatt
ttggaataccatatacctgattcattgctttctgggatagaatgtgagcaagcaaaagcc
aagcgtggagtacagtttgacaggaaagaaccatttggagaaagatcaaggagacactct
cctgtaagtggcactaatagaccttttgctgataacctctcaccacttgagagtcgacga
agacttgaggaacagaattcaactaaaggagcaagaggttctaagaactttgatccttac
gacagctggggagaatcagatgaatttagagatactctcagacaacaggggaaaagcacc
acagagttccagaaaatagatggtgatgcaatctgcagatttgataatcgtgaagaaaga
cagctacttgggcaagctggtgttcgagaggagccaagatcaccattcagtgaacgtttc
aaaagagctagatatgaagatccagagaaagcaccatttccagaaagcccaggatcacga
tttggaggcattgaagcaaagcagaggataagtgcgctaatggaagacagacctctattt
gatggctcacctaggcaggctgcttccagagttggagtagatggacagggaagccctttt
gttgatggtgctgctgctggttcaagttctagaattgatgggccacctggacaggctgct
atgagatttgaggggcctttggtgggggcaggtgcatctcagtttgatggaccactggca
ggagcagggggagctggagctctaagatttgatgggccaccagggcagctggcagggggc
ctgaggtttgaaggaccaccaggacaggttggtggtggaggtccactgaggtttgatgga
cctcttgggcagatcggtgggtctttgcggtttgaggggcctgcagggcagcctgtaggt
agtcctagatttgaaggaactggagttggcctcaagtttgagggtccccgtggccagcct
tcaggtgttctcaggtttgagggacttcatggtcaacctatggggcctcgaggtcagcca
gggggtgttctcaggtttgagggacatcatggtcagcccttggggcctcatggtcaacca
gggggtggtctcaggtttgaggggtcacatttacagccattggggcctcatggccaacct
ggaggtggcctcagatttgaggggcaacatggtcagcctatggggccacatggaccatca
ggtgctgggctgagatttgacgggccacatggaccatcaggtgctggactgagattggaa
ggaccacatggtcagccaggtgtaggtcctagattgattgatggaccagtacaccaggga
gctggtggacatagatttgatggtcctctgggtcgggctggtccaagatttgatggttgt
catgcagctgcatttgatggtcagcctggacagctgcctctcttgcaaagatttgatgga
attcatggacagcctggtccaagatttgaaaggacacctggccaacaggcacaaccacga
tttgatacagccatacctcaaagatttgatggacctcaccagccagcctctagatttgac
ttgccccttggccttcaaggtgcacgttttgaaaatgtagctaaccatcctgcctcaaga
ttagaaatgtcaccatatggacaaggtggtccatttgtcgaacatcccggccagggctac
aatggaccatctcatgggatgccgttccagagacctgatatatttgatggttcacctgga
tcaaatttcaatgggccagctggcccaggagcacagaatttcccattgagaccagctgga
cattactttgatgaaaaaactcttcagggtcctcaatatgggaacttcaataatatgcca
ctgggaagtaatcagaggttgtcgtggtttgaatctggccagcagccaaacaccatgcag
cagcttgctcaccctcccctatcctggggaatggggaagcgaattagaggagtaaaggtt
cctcttatgtctgctcaaccagggccttatggccaaggtcaacagtatttgccaaatcct
ggaagttttgttcagaaccctgcaggagcccttccacattcatatcctgataaccatctt
ggacagcttgatgtcaatgaattgtttgctaaactgctgtcaacagggatcctcaaactg
tcaaaaactgattccacttcagcacaagtgaatgaaacatcagcccagccagctgctgaa
gaggaagatgatgaccagaatgaagatcaaaatgttccagacctcactaacttcatagtt
gaagaactcagacagcgttatgatagtgttataaatcgactgtacactggcattcagtgt
tattcatgtggaatgagattcactacttcacagacagatgtttatgcggatcatttagac
tggcattatcgtcagaaccggacagaaaaagatgttagcagaaaaattacacacagaaga
tggtactacagtttaacagactggattgaatttgaagaaatagctgatctagaagagcgt
gcaaaaagccagtattttgaaaaagttaatgaagaggttgtgttgaagacacaagaagct
gcgaaagagaaggagtttcagagtgtccctgctggaccagctggagcagttgagagctgt
gaaatttgccgggagcaatttgaacagtattgggatgaagaagaggaagagtggcacctg
aagaatgctatcagagtagatgaaaagatttaccatccatcttgctatgaagattaccaa
aacacatcatcatttgattgcacaccatctcccagcaagactcctgtagaaaatccacta
aatataatgttgaacattgttaaacaagaaacacaagagtcctgtgactcacctaaagtc
aaagaagaacctgatgacacccctactgcctgtgcagaagagagcacacctgcatctaca
gatattaaaacagaacctgatgagtctatttaa
DBGET
integrated database retrieval system
