Alicyclobacillus curvatus: JZ785_17005
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Entry
JZ785_17005 CDS
T08166
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
acur
Alicyclobacillus curvatus
Pathway
acur03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
acur00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
JZ785_17005 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
acur03400
]
JZ785_17005 (mfd)
Enzymes [BR:
acur01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
JZ785_17005 (mfd)
DNA repair and recombination proteins [BR:
acur03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
JZ785_17005 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
RecG_dom3_C
MFD_D3
Motif
Other DBs
NCBI-ProteinID:
QSO55204
LinkDB
All DBs
Position
complement(3564826..3568353)
Genome browser
AA seq
1175 aa
AA seq
DB search
MSDGELRRAMTSLRSGGHSGLVTGLSGSARHLYYAAAHMMRKSQNPGGVTLVVTHSASEA
QQVAEDLQEFLPDEKILLYPERELAIADVMAYSRDVTSERLQVLEYLSRPHQGGVVVATI
NSAVQPVMKRQLFKGLIRAYALGDEVSLEKEIEWMVKAGYERVDLVENWGQFSVRGGILD
VYPLTSAHPIRIELFDTEVDSIRAFDAATQRSLDKRKTAQIGPAFDFLIPAARMEAVAEH
LAEHLETRVRTVTDLEVRDRLQSVVGSDIRKFSSGMPFFGQLRYTDLLKDHVDTVMDYIS
DNGLLILDEPTRLLERQRGIEKEVREWISTALLRGELIAGALSEPAFQILWDHKGYAAIE
FTVFARAAGAGRYAFVVNVTAKSMQQFHGQMNVLKTEMQRWAHSQTRVILLAATEERQDR
LERVLADYRMESTRGQVPEQGGMPVLRVGTLSSGFELPMARLAVILDTEIFSSQKKGRRV
RAEMSDAERIRSYQELNTGDYVVHVNHGIGKYLGIRTLEVDGRHKDYLHLQYAGADSLYV
PVEQIDQVQRYIGSDDKEPKVYHLGGNDWNRVKQKVSKSVRDIAEDLVKLYAARQSTPGF
AYAEDTPWQKDFEAMFPYEETPDQVRAIDEIKKDMEQSRPMDRLLCGDVGYGKTEVALRG
AFKVVMDGKQVAVLVPTTILAHQHYETFKERFAGFPVTVEVLSRFKGRKESTAIVKGLKD
GSVDVVIGTHRLLNKTIQFKDLGLLIVDEEQRFGVTHKERIKQIRTNVDCLTLTATPIPR
TLHMSLLGVRDLSVIETPPENRFPVQTYVVEHNDGLMREALERELNRGGQVYYLYNQVQS
IRSMADRLAKLVPDARIAVAHGQMPEEELERVMLDFLEGEIDVLVTTTIIETGLDIPNVN
TLLVHDADRLGLAQLYQLRGRVGRSNRIAYAYFTYQRDKVLTEVAEKRLQAIKEFTELGS
GFKIAMRDLAIRGAGNLLGAEQHGFIHSVGFDLYNDMLADAVKEIRGEQEKAAPEPSIDL
ALEAYLPDDFISNPAQKIAMYKKLKFVRSPEAAADVEEELEDRYGEMPEPVLNLLDVTRM
KSYAMRYGIESIANHGAETVVRVRASMTSNLNHGVLFGIVLQHKGEYRKRTDGTVQITFR
TKGLSDRELCRMLVRFLEAFGDALNTKQGVEQLAK
NT seq
3528 nt
NT seq
+upstream
nt +downstream
nt
atgtccgatggagagttgcggcgggcgatgacctccctgcgcagcgggggacacagcggg
ttagtcacaggtctcagcggcagcgcgaggcatctttactacgccgccgcacacatgatg
cgtaagtcgcagaatccaggcggtgtcacactagtggtgacgcattccgcgagtgaagcc
cagcaagtagcagaggacttgcaagaatttctcccggacgaaaaaatcctgctttacccg
gaacgtgagttggccatcgcggacgtgatggcctatagccgcgatgtcacgtccgagcgg
ctgcaggttctggaatacctgtctcgtccccatcaaggcggcgttgtcgtcgccaccatc
aactcggctgtgcaaccggtgatgaaacggcaattattcaaaggactcattcgggcgtat
gcccttggagatgaagtgtcgctcgagaaagaaattgaatggatggtcaaggccggatat
gaacgggtcgacctcgtcgagaactggggacagttttctgtccgcggtggcattctcgac
gtctatccgcttacgtccgcgcacccgattcgaattgaattgtttgacaccgaagtggat
tccattcgtgcgtttgacgctgcgacacagcggtcactcgataagcgaaagacagcacaa
atcggtcctgcctttgattttctgattccggccgcaaggatggaagctgttgcagagcac
ttggccgagcatctcgaaacccgtgttcgtacggtgactgacttagaggttagagataga
ttgcaaagcgtagttggttcagatatccgaaaattctcatcaggaatgccgtttttcggt
cagttgcgctacaccgatttattgaaggatcacgtggacaccgtgatggactatatatcg
gacaacggtctgttgattttggacgaacctacaaggctcctggaacggcagcgcggtatc
gaaaaagaagtccgcgaatggatttcgactgccttgttgcgtggagaactgattgcaggc
gctttgtcagaaccggcgtttcaaatcctctgggaccacaaaggctacgcagccatcgag
tttactgtattcgcccgtgcagcaggcgcaggccgctacgcctttgtcgtgaatgtaaca
gccaagtcgatgcagcaatttcacggccagatgaatgtacttaagacagaaatgcaacgg
tgggcgcacagccagacacgggtcattttgctggcggcgacagaagagcgacaagaccgg
ttagaacgagtacttgccgattatcgtatggagtcgacacgaggccaggttcctgagcaa
gggggcatgcctgttttgcgcgtcggtacactcagttccggctttgagttgccgatggca
aggctcgcagtcattctcgatacagaaatcttctcctcgcagaaaaagggccggcgagtt
cgggccgagatgtctgacgcagaaagaatccgcagttaccaagaactgaacaccggtgat
tacgttgttcatgtgaaccatggcatcggtaaatacctcggcattcgcactctcgaagta
gatggccgccataaagactaccttcatctccaatacgcgggggcggatagtctctacgtt
cccgtcgagcagatcgatcaggtgcagcgatacatcgggtcggacgacaaggaacctaag
gtctatcacctcgggggcaacgattggaacagggtgaaacagaaggtctccaagtcggtt
agagatattgcagaggacctcgtgaaattgtacgcggcgcggcaatcgacacctgggttc
gcgtacgcagaagatacaccttggcagaaggactttgaggcgatgttcccgtacgaagag
acccctgaccaggttcgcgctattgacgaaatcaagaaagacatggaacaatccagaccc
atggatagactgttgtgcggcgacgtcggctacgggaaaaccgaggtcgcactgcggggc
gccttcaaggtcgtgatggacggaaaacaagtcgccgtgctggtgccgacaacgattctg
gcgcaccaacactatgaaacctttaaagagcgttttgcgggcttccccgtcaccgtagag
gtgttaagtcggttcaagggtcggaaggaatctaccgcgattgtgaaaggcctcaaagac
ggcagtgtagacgtcgtgattgggacgcatcgcctgctcaataagaccatccaatttaaa
gacctcggactgctcattgtcgacgaagagcagcggtttggcgttacccacaaggaacgc
atcaaacaaatacgcaccaatgtagactgcctgacattgactgcgacgccgattccccgc
acactgcacatgtcgcttcttggtgtccgggatttgtctgtcatcgagacgccgccagag
aatcgttttccggtacagacgtacgttgtcgaacacaacgacggtctaatgcgcgaggcg
ctcgagcgcgaactcaaccgcggcggacaggtctattacctctacaaccaggtgcagagt
atccgttcaatggcagatagactggcgaaactcgttcctgatgcacggattgcagtcgca
cacggtcagatgccggaggaggaactcgagcgcgtcatgctcgattttctcgaaggagag
atagacgttctcgtcacgaccaccatcatcgagacgggacttgacattccgaacgtgaac
acactgctcgtgcatgatgctgacaggctcggactcgctcagctgtatcaactgcgagga
cgtgtcggccgctccaatcgaattgcctatgcctatttcacataccaacgcgacaaggtt
ctgaccgaagtggcagagaagcgtctgcaggcgattaaggagtttacggaactgggcagc
ggtttcaaaattgccatgcgcgatctcgctatccgcggtgccggtaacctgctcggcgct
gaacagcacggtttcatccattcagttggctttgacctgtataacgacatgttggctgat
gcggtcaaggagatacggggtgagcaggagaaagcggcacctgagcccagtatcgacctg
gccctggaagcatatctgccggacgactttatttccaatccggcacagaaaatcgcgatg
tacaagaaactcaagtttgtgcgcagcccggaggctgcggcagatgtggaagaggagctt
gaagaccgctacggagagatgcctgaacctgtgttgaacttgcttgatgtaacgcgtatg
aagagctatgccatgcgctacggcatcgaaagtatcgccaatcacggcgcagaaaccgta
gtccgcgtaagggcttcaatgacgtcaaatttaaaccacggcgtgctctttggcattgtg
ctgcaacacaagggagaatacagaaagcgcacggacggcaccgtgcaaattactttccgt
acaaaaggactttccgaccgtgaactctgtcgcatgttggttcgcttcctggaggccttt
ggcgacgcactaaacacaaaacaaggagttgaacagcttgcgaagtaa
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