Acuticoccus sp. I52.16.1: MRB58_02705
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Entry
MRB58_02705 CDS
T08076
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
acut
Acuticoccus sp. I52.16.1
Pathway
acut03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
acut00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MRB58_02705 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
acut03400
]
MRB58_02705 (mfd)
Enzymes [BR:
acut01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MRB58_02705 (mfd)
DNA repair and recombination proteins [BR:
acut03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
MRB58_02705 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
CarD_TRCF_RID
UvrB_inter
ResIII
Cas3-like_C_2
RecG_dom3_C
AAA_16
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
UOM36804
LinkDB
All DBs
Position
complement(587284..590715)
Genome browser
AA seq
1143 aa
AA seq
DB search
MEGEVLATMAAATGDAVMFVARDGARLKAAENALAFFAPELAVVRLPAWDCMPYDRASPS
ALVQARRAAALATLAARKAGDGPMVVLTTANAILQRAPKPEVIRRATLRHAAGSDVVMKD
VLAWLEDNAFLRTPTVREAGEYAVRGGIVDLYAPGTEQPVRLDFFGDTLETIRPFDPDTQ
RTTGQWPMIELIPMSEVILDEETISRFREGYLRRFGAATKDDILYHSVSEGVRAAGVEHW
MPLFHEGLATVFDYVPGAPMVIDHLAEDAVAKRVAEIEDHYAARTTAIEQSLKGAPYNPL
PTDELYLTGLSTEEMLEGHRVIRLSPFDEPERPEQLTIPAGGKVGRSFAAERSAGNVNIF
VSLVDHVNAIRKDGRRPIIASWSEGSRSRMAQVLRDHGVGAMTEVGTIEEAGALPKAEAA
LTVMELETGFETPNYVIVAEQDVLGDRLVSSSRKRKRDANFLTEASSLAEGDLVVHVDHG
IGRFIGLKTLEAAGAPHDCVEIAYQKDDKLYLPVENIDLLSRYGAADTEGVVLDKLGGAG
WQARKAKMKERVREIADGLIKTAAQRLLKKAPVIEPATGVYDEFVAKFPYNETDDQLSAI
EAVAEDLAKGTPMDRLVCGDVGFGKTEVAIRAAFLAAMDGKQVALIVPTTLLARQHYKTF
AERFAGLPLRVEQASRLVGPKHMREVKAGLKNGDVDIIVGTHALLAKGIEFRDLGLLIVD
EEQKFGVKHKERLKEIKSDVHVLTLSATPIPRTMQLALTGVRELSLIATPPVDRLTVRTF
VTPFDALTIREALLRERYRGGQSFYVCPRVSDLAGQKEFLEQHVPEVKVAVAHGQMSPTE
LDDVMNAFYDGQYDVLLATTIVESGLDIPTANTLIVHRADMFGLAQLYQIRGRVGRSKTR
AYALMTTPVDKTLTGPAQRRLKVLSSLDTLGAGFQLASHDLDIRGAGNLLGEEQSGHIKE
VGFELYQSMLEEAVATLKSGSDEEAPDQWSPHISVGIPVLIPEDYIPDLQLRMSLYRRLA
DLDDAQSIDAFGAELVDRFGKVPEEVEWLMKIVYIKSLCRRANVEKIDAGPKGCVVSFRN
NEFNNASGLVQMIAGEGSLAKMRPDQKVVFIRDWPDPDKRTKGVAVLLTKMAKLAEQEEK
AAA
NT seq
3432 nt
NT seq
+upstream
nt +downstream
nt
atggaaggcgaggttctcgccacgatggccgccgcgacgggcgatgcggtgatgttcgtc
gcgcgcgacggggcgcggctgaaggcggcggagaacgcgctcgccttcttcgcgccggag
ctggcggtggtgcgcctgccggcttgggactgcatgccctacgatcgcgcctcgccctcc
gcgctcgtccaggcacgccgcgccgccgcactggcgacactcgccgcgcgcaaggccggc
gacggaccgatggtggtgctgaccaccgccaacgccatcctgcagcgtgcgcccaagccg
gaggtgatccgccgcgccacgctgcgccacgccgccggatcggacgtcgtcatgaaggac
gtcctcgcctggctggaggacaacgccttcctgcgcacgcccacggtgcgcgaggcgggt
gaatatgcggtacgcggcggcatcgtcgacctctacgcgcccggcaccgagcagcccgtc
cggctcgacttcttcggcgacacgctggagacgatccgcccgttcgatcccgacacgcag
cgcaccaccggccagtggccgatgatcgagctgatcccgatgagcgaggtgatcctcgac
gaggagaccatctcgcgcttccgcgagggctacctgcgccgcttcggcgccgccacgaag
gacgacatcctctaccactccgtctccgaaggcgtgcgcgcggcgggcgtcgagcattgg
atgccgctcttccacgagggcctcgcgacggtgttcgactacgtgcccggcgctccgatg
gtgatcgaccacctggccgaggacgccgtcgccaagcgcgtcgccgagatcgaggaccac
tatgcggcccgcaccacggcgatcgagcagtcgctcaagggcgcgccctacaacccgctg
ccgaccgacgaactctacctcaccggcctctccaccgaggagatgctggaggggcaccgc
gtcatccgcctgtcgccgttcgacgagccggagcggcccgagcagttgacgatcccggcg
ggcggcaaggtcggccgctcgttcgcggcggagcgctcggccggcaacgtcaacatcttc
gtctccctggtcgaccatgtgaacgcgatccgcaaggacgggcggcggccgatcatcgcc
tcatggtcggagggctcgcgctcgcgcatggcgcaggtgctgcgcgaccacggcgtcggt
gcgatgaccgaagtcggcacgatcgaggaggccggcgcgctccccaaggccgaggccgcg
ctcacggtgatggagctggagaccgggttcgagacgcccaactacgtcatcgtcgccgag
caggacgttctgggcgaccgtctcgtctcctccagccgcaagcgcaagcgcgacgccaac
ttccttaccgaggcatcctcgctggcggagggcgacctcgtcgtccacgtcgaccacggc
atcggccggttcatcggcctcaagacgctggaggccgccggcgcgccgcacgactgcgtc
gagatcgcctatcagaaggacgacaaactctacctgccggtcgagaacatcgacctcctg
tcccgctacggcgcggcggacaccgagggcgtcgtcctcgacaagctgggcggcgcaggc
tggcaggcgcgcaaggcgaagatgaaggagcgcgtgcgcgagatcgccgacggtctcatc
aagaccgccgcgcagcgcctcctgaagaaggccccggtgatcgagccggcgaccggcgtc
tacgacgagttcgtcgccaagtttccctacaacgagaccgacgaccagctctccgccatc
gaggcggtggccgaggacctcgccaaaggcacgccgatggaccgcctggtgtgcggcgac
gtcggcttcggcaagacggaggtggcgattcgtgccgccttcctcgccgcgatggacggc
aagcaggtggcgctgatcgtgccgacgacgctcctcgcgcgccagcactacaagaccttc
gccgaacgcttcgccggcctgcccttgcgtgtcgagcaggcctcgcgcctcgttggcccc
aagcatatgcgcgaggtgaaggcggggctgaagaacggcgacgtcgacatcatcgtcggc
actcacgcgctcctcgccaaggggatcgagttccgcgacctcggcctgctgatcgtcgac
gaggagcagaagttcggcgtcaagcacaaggagcggctgaaggagatcaagtccgacgtc
cacgtgctcaccctctcggcgacgccgatcccgcgcacgatgcagctcgccctcaccggc
gtgcgcgagctgtcgctcatcgcgacgccgccggtcgaccggctgacggtgcgcacgttc
gtgaccccgttcgacgcgctgacgatccgcgaggcgctcctgcgggagcgctaccgcggc
ggccagtccttctacgtctgcccgcgcgtgtcggacctcgcgggtcagaaggagtttctg
gagcagcacgtgccggaggtgaaggtcgccgtcgcgcacgggcagatgtcgccgaccgag
ctcgacgatgtgatgaacgccttctacgacgggcagtacgacgtgctgctggcgacgacc
atcgtggaatcggggctcgatatcccgaccgccaacacgctgatcgtccaccgggcggac
atgttcggcctggcgcagctctaccagatccgcggccgcgtcggccggtccaagaccaga
gcctacgcgctgatgacgacgccggtggacaagacgctgaccggcccggcgcagcggcgt
ctcaaggtgctctcctcgctcgacacgctgggcgccggcttccagctcgcctcccacgat
ctcgacattcgaggcgcgggcaacctcctgggagaagagcagtcggggcacatcaaggag
gtcggcttcgagctctaccagtcgatgctggaggaggcggtggcgaccttgaaatcgggc
tccgacgaagaggcgccggaccagtggtcgccgcacatctcggtcggcatcccggtgctg
atcccggaggactacattcccgatctgcagctgcgcatgagcctctaccgccgcctcgcc
gacctcgacgacgcgcaatctatcgacgcgttcggcgccgagctggtcgaccgtttcggc
aaggtgccggaggaggtcgagtggctgatgaagatcgtctacatcaagagcctgtgccgg
cgcgccaacgtcgagaagatcgacgccgggccgaagggctgcgtcgtctcgttccgcaac
aacgagttcaacaacgcctcggggctcgtccagatgatcgccggcgagggctcgctcgcc
aagatgcgcccggaccagaaggtggtcttcatccgcgactggcccgatcccgacaagcgc
accaagggcgtcgcggtcctgttgaccaagatggccaagctcgccgagcaggaggagaag
gcggccgcgtga
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