Acuticoccus sp. I52.16.1: MRB58_03600
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Entry
MRB58_03600 CDS
T08076
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
acut
Acuticoccus sp. I52.16.1
Pathway
acut03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
acut00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
MRB58_03600 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
acut03021
]
MRB58_03600 (rpoC)
03400 DNA repair and recombination proteins [BR:
acut03400
]
MRB58_03600 (rpoC)
Enzymes [BR:
acut01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
MRB58_03600 (rpoC)
Transcription machinery [BR:
acut03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
MRB58_03600 (rpoC)
DNA repair and recombination proteins [BR:
acut03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
MRB58_03600 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
UOM35306
LinkDB
All DBs
Position
complement(800786..805000)
Genome browser
AA seq
1404 aa
AA seq
DB search
MNQEVMNLFNTQAPTQTFDRIRISIASPEKIRSWSFGEIKKPETINYRTFKPERDGLFCA
RIFGPIKDYECLCGKYKRMKFKGVICEKCGVEVTLSRVRRERMGHIELAAPVAHIWFLKS
LPSRIGLLLDMTLKDLERVLYFESYIVTDPGMVTEIKRGQLLSEDEFLDLQDTHGETFTA
LIGAEAIRELLLQLDLPRESESLRKEIAESTSELKPKKLAKRLKIVDSFLESGNKPEWMI
MQVIPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIIRNEKRM
LQESVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVG
PELKLHQCGLPKKMALELFKPFIYSRLDAKGYSSTVKQAKKLVEKEKPEVWDILDEVIRE
HPVLLNRAPTLHRLGIQAFEPKLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQL
EARTLMMSTNNILHPANGQPIIVPSQDIVLGLYYLSIMSENEPGEGMTFGSINELQHALD
AKIVTVHSKVKVRYKTFDEDGNPLSQIHETTPGRALIGDLLPRSPKVPYDTCNQLMTKKN
ISKMIDAVYRGTGQKETVIFCDRVMQLGFTNAFKAGISFGKDDMVIPDSKYSTVNETAEL
AKEFEQQYFDGLITQGEKYNKVIDAWAKCTDKVAAAMMEKISAVETDPETGRTKQMNSVY
MMSHSGARGSPTQMRQLAAMRGLMAKPSGEIIETPITSNFKEGLTVLEYFNSTHGARKGL
ADTALKTANSGYLTRRLVDVAQDAIISEYDCGSTRGITMEPIVDAGQVIATLSSRVLGRT
AAEDVHAPATGELICKAGTLMDEKDVEAIEEARVQSLKIRSVLTCETRNGVCAACYGRDL
ARGTPVNMGEAVGVIAAQSIGEPGTQLTMRTFHVGGTAQVVDSSFIESSFVGTIKLKNRN
VVRDSDGNLMVMGRNVQVAVIDADGTERASYKLTYGAKLHVDDGDSIKRGQRIAEWDPYT
RPILTEVDGVVDFEDLVDGISVSEAADEATGITKRVVTDWRTHTRGSSLRPAVVVKAADG
SLVKLPRGGEARYLLSVDTVLSVDTGGKVHAGDVLARIPLESAKTRDITGGLPRVAELFE
ARRPKDNAVIAEMDGTIRFGKDFKNKRRIIIDPPADSGLEPIEYMVPKGKHIHLQDGDPI
EKGDYILDGNPAPHDILAIHGVEALAAYLVNEIQGVYRLQGVGINDKHIEVIVRQMLQKV
QITDPGDSDLLNNEEIDRQELQELNDDLIADGKKPASGDPVLLGITKASLQTRSFISAAS
FQETTRVLTEAAVSGKADQLEGLKENVIVGRLIPAGTGGMINRIREIAAKRDDLIMEAER
AAQGATEGAQLIEDMRQDDPVPGE
NT seq
4215 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaggaagtgatgaacctgttcaacacgcaggcgcccacgcagacgttcgaccgg
atccggatctccatcgcgagccccgagaaaatccgttcgtggtccttcggcgagatcaag
aagccggagaccatcaactaccgcaccttcaagccggagcgggacggcctgttctgcgcg
cgcatcttcggtccgatcaaggactacgagtgcctgtgcggcaaatacaagcggatgaag
ttcaagggcgtcatctgcgagaagtgcggcgtcgaagtcaccctgtcgcgcgtgcggcgc
gagcggatgggccatatcgagctcgccgccccggtcgcgcacatctggttcctgaagtcg
ttgccctcgcgcatcggcctcctcctggacatgacgctgaaggacctcgagcgcgtcctc
tacttcgagtcctacatcgtcaccgatccgggcatggtcaccgagatcaagcgcggccag
ctcttgtccgaggacgagttcctcgacctgcaggacacgcacggcgagaccttcaccgcg
ctgatcggcgcggaggcgatccgcgagctgctgctccagctcgatctgccgcgcgaatcg
gagagcctgcgcaaggagatcgccgagtcgacctccgagctgaagccgaagaagctcgcc
aagcggctgaagatcgtcgactcgttcctcgagtccggcaacaagcccgagtggatgatc
atgcaggtcatccccgtgatcccgccggacctgcgcccgctggtcccgctggatggtggc
cgcttcgcgacgtcggacctcaacgacctctaccgccgcgtcatcaaccgcaacaaccgc
ctgaagcgcctcatcgagctgcgcgcgccggacatcatcatccgcaacgagaagcggatg
ctgcaggagtccgtcgacgcgctgttcgacaacggccgccgcggccgcgtcatcacgggc
gccaacaagcgcccgctgaagtcgctgtcggacatgctgaagggcaagcagggccggttc
cgccagaacctgctcggcaagcgcgtcgactattccggccgttcggtcatcgtcgtgggt
ccggagctgaagctccaccagtgcggcctgccgaagaagatggcgctcgagctcttcaag
cccttcatctactcgcgtctcgacgcgaagggctactcgtccacggtgaagcaggcgaag
aagctggtcgagaaggagaagcccgaggtctgggatatcctcgacgaggtgatccgcgag
catccggtgctgctcaaccgcgcgccgacgctccaccgtctcggcatccaggcgttcgag
cccaagctgatcgagggtaaggcgatccagctgcacccgctggtctgcaccgccttcaac
gcggacttcgacggcgaccagatggccgtgcacgttcccctctcgctggaagcccagctc
gaggcgcgcacgctcatgatgtcgacgaacaacatcctgcatccggcgaacggtcagccg
atcatcgtgccgtcgcaggacatcgtcttgggcctctactacctgtcgatcatgtcggag
aacgagccgggcgagggcatgaccttcggctcgatcaacgagctgcagcatgcgctcgat
gccaagatcgtcactgtgcactcgaaggtgaaggtccgctacaagacgttcgacgaggac
ggcaacccgctgtcgcagatccacgagacgacgccgggccgcgccctcatcggcgacctg
ctgccgcgctcgccgaaggtgccgtacgacacctgcaaccagctgatgaccaagaagaac
atctccaagatgatcgacgccgtgtaccgcggcaccggtcagaaggagacggtcatcttc
tgtgatcgcgtgatgcagctgggtttcaccaacgcgttcaaggccggcatctcgttcggc
aaggacgacatggtgatccccgactccaagtactcgaccgtgaacgagacggccgagctg
gcgaaggagttcgagcagcagtacttcgacggcctgatcacccagggcgagaagtacaac
aaggtcatcgacgcctgggcgaagtgcaccgacaaggtcgccgccgcgatgatggagaag
atctccgccgtcgagacggaccccgagacgggccgcaccaagcagatgaactcggtctac
atgatgtcgcactccggtgcgcgtggctcgcccacccagatgcgtcagctggcggcgatg
cgcggcctcatggccaagccgtccggcgagatcatcgagaccccgatcacctcgaacttc
aaagaggggctcaccgttctggagtacttcaactccacccacggtgcgcgtaagggcctc
gccgacaccgcgctcaagaccgccaactcgggctacctcacccgccgtctggtggacgtg
gcgcaggacgcgatcatctccgagtacgactgcggctcgacccgcggcatcaccatggag
ccgatcgtcgacgccggtcaggtcatcgccacgctgtcgagccgcgtgctcggccgcacc
gcggcggaggacgtgcatgccccggccaccggcgagctgatctgcaaggccggcacgctg
atggacgagaaggacgtcgaggccatcgaagaggcccgcgtccagtcgctgaagatccgc
tcggtgctcacctgcgagacccgcaacggcgtgtgtgcggcctgctacgggcgcgacctc
gcccgcggtacgccggtgaacatgggcgaggcggtcggcgtcatcgcggcgcagtcgatc
ggcgagccgggcacgcagctcaccatgcgcaccttccacgtcggcggtacggcgcaggtg
gtcgactcctcgttcatcgagtcctcgttcgtgggcaccatcaagctgaagaaccgcaac
gtggtgcgcgattcggacggcaacctgatggtgatgggccgcaacgtgcaggtcgccgtg
atcgacgcggacggcaccgagcgggcgagctacaagctcacctacggcgccaagctgcat
gtcgacgacggcgactccatcaagcgcggccagcgcatcgccgagtgggacccctacacc
cgcccgatcctcaccgaggtcgacggtgtggtggacttcgaggacctggtcgacggcatc
tcggtctccgaggccgcggacgaggcgacgggtatcaccaagcgcgtcgtcaccgactgg
cgcacccacacccgcggctcgtcgctgcgtccggcggtggtcgtcaaggcggccgacggc
agcctcgtgaagctgccgcgcggcggtgaggcccgctacctgctctcggtcgacaccgtc
ctctcggtcgacaccggcggcaaggtgcatgccggcgacgtgctcgcccgtatcccgctg
gagagcgccaagacgcgtgacatcaccggcggtctgccgcgcgtcgccgagctcttcgag
gcccgtcgtccgaaggacaacgcggtcatcgcggagatggacggcaccatccgcttcggc
aaggacttcaagaacaagcggcggatcatcatcgacccgccggcggactccgggctcgag
ccgatcgagtacatggtcccgaagggcaagcacattcaccttcaggacggcgacccgatc
gagaagggtgactacatcctcgacggcaacccggcgccgcacgacatcctggccattcat
ggcgtggaggcgctcgccgcctacctcgtcaacgagatccagggcgtctaccggctccag
ggcgtgggcatcaacgacaagcacatcgaggtgatcgtgcgtcagatgctgcagaaggtt
cagatcaccgatccgggcgattcggacctcctgaacaacgaggagatcgaccgtcaggag
ctgcaggagctgaacgacgacctgatcgccgacggcaagaagccggcgtccggcgacccg
gtcctgctcggcatcaccaaggcgtcgttgcagacccgctcgttcatctcggcggcgtcg
ttccaggagaccacccgcgtcctcaccgaggcggcggtgtccggcaaggccgaccagctg
gaaggcctgaaggagaacgtcatcgtcggccgcctcatcccggcgggcaccggcggcatg
atcaaccgtatccgcgagatcgccgccaagcgcgacgacctcatcatggaggcggagcgt
gccgcgcagggcgccaccgagggggcacagctgatcgaggatatgcggcaggacgatccg
gttccgggcgagtaa
DBGET
integrated database retrieval system
