Acuticoccus sp. I52.16.1: MRB58_14490
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Entry
MRB58_14490 CDS
T08076
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
acut
Acuticoccus sp. I52.16.1
Pathway
acut03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
acut00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MRB58_14490
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acut03019
]
MRB58_14490
03009 Ribosome biogenesis [BR:
acut03009
]
MRB58_14490
Enzymes [BR:
acut01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
MRB58_14490
Messenger RNA biogenesis [BR:
acut03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
MRB58_14490
Ribosome biogenesis [BR:
acut03009
]
Prokaryotic type
rRNA processing factors
MRB58_14490
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
UOM33075
LinkDB
All DBs
Position
complement(3186690..3189758)
Genome browser
AA seq
1022 aa
AA seq
DB search
MPNKMLIDAIHPEETRVVVLRDKKVEDFDFEAASKKPLRGNIYLAKVTRVEPSLQAAFIE
YGGNRHGFLAFSEIHPDYYQIPQADRAALLADERASRTDEDDEAPKKSRGGSRRRGAKSD
DAGSGGGNSRRQSRSAAKADPAAEPVNEAKADETAPAQLANPSASVAEEAVSSDEAPVSL
DRAIAQVEETYEADIDAAVDNPARDVEVTGEGESAYDAPGAAASEESAAVTPSPASDEAR
AEAAAPTVAAETDAAPGAVTENAAPEAVAEAATPADGEAEPVEEKPKRRRRTTAGTATKA
KTGTTTTRKRAPAAKKPTTKKSDDGLADPVVSDDEALREDDRNDHDDDDDSVTSIGEQDA
LEEIPERRRAAPRRQYKIQDVIRRRQILLVQVVKEERGTKGAALTTYLSLAGRYSVLMPN
TDRGGGVSRKITDNADRKRLKSSVAELEVPEGMGIILRTAAASRTKTEIKRDFEYLIRLW
ESVRDLTLASIAPQLVYEEGNLVKRAIRDLYNKEIDEVLVSGEPAYREAKDFMKMLMPSH
AKNVKRYLEPTPIFTKYSVESQLDAMFSEVVTLPSKGYLVINPTEALVSIDVNSGRSTKE
SNIEDTALKTNLEAADEVARQLRLRDLAGLIVIDFIDMDEKRHNRQVEKRLKDALKLDRS
RIQVGRISPFGLLEMSRQRIRQGMVETSMVPCEACGGNGHVRSTQSVALHCLRALEDHLL
KHADHNVTIKTSATVALYILNQKRQHLNELEERFGLEIGVDADETLSGQHLAIVPGALVV
REPGVEPPTAQIAPDAAIVEHDDEDEIEGEDESTVEAESEAETTEARDASGERSGSRRRR
RRRRRGGGADDRRDDESRGNSGDEDGAQVASDGGDAVTGEVEAESDTEDSGAEDTGDGEM
QADGDDDRRGRRRRGRRGGRRHRRDEDTAEDGETAEAAPVNETEAAAAPQAPEPAATPDE
APAAEAAAQDAPAEAASANGADTEADAAEEPAAEAAEAPAPEQKSDGARPRRAGWWQRRS
FF
NT seq
3069 nt
NT seq
+upstream
nt +downstream
nt
atgcccaacaagatgctgatcgatgcgatccacccggaggagacgcgcgtcgtcgtcctt
cgcgacaagaaggtggaggacttcgacttcgaggcggccagcaagaagccgctgcgcggt
aacatctacctcgccaaggtcacgcgcgtcgaaccgtcgcttcaggccgccttcatcgaa
tatggcggcaaccgccacggcttcctcgccttcagcgagatccaccccgactactaccag
atcccgcaggccgaccgcgccgcgctgctggccgacgagcgcgcctcccgcaccgacgag
gacgacgaggcccccaagaagagccgcggcggcagccgccgccggggcgccaagagcgac
gacgccggcagcggcggcggcaactcgcgccgccagtcccggtccgccgccaaggccgat
cccgccgccgagccggtgaacgaggccaaggccgacgagaccgccccggcgcaactcgcc
aatccgagtgccagcgtcgccgaagaggccgtctcctcggacgaggcgcccgtgtcgctc
gaccgcgccatcgcccaggtcgaggagacctacgaggccgacatcgacgccgccgtcgac
aatccggcgcgcgacgtcgaggtcacgggcgaaggcgagtccgcctatgacgcccccggc
gccgccgcctccgaggagagcgcggccgtcaccccctcccccgcctccgacgaggcacgc
gcggaggccgccgcgccgaccgtcgccgccgaaaccgacgccgcccccggcgcagtgacc
gagaacgccgcgcccgaggccgtcgccgaggccgccacgcccgccgatggcgaggccgag
ccggtcgaggagaagcccaagcggcgccgccgcaccaccgccggcaccgcgacgaaggcc
aagacgggcaccaccaccacccgcaagcgcgcccccgccgccaagaagccgacgaccaag
aagtccgacgacggtctcgccgacccggtcgtctcggacgacgaggcgctgcgcgaggac
gaccgcaacgatcacgacgacgacgacgattcggtcacctcgatcggcgagcaggacgcg
ctggaggagatccccgagcgtcgccgcgccgccccgcgccgtcagtacaagatccaggac
gtgatccgccgccggcagatcctgctggtccaggtcgtcaaggaagagcgcggcaccaag
ggcgcggcgctgaccacctacctgtcgctcgccggccgctactcggtgctgatgcccaac
acggaccgcggtggcggcgtgtcgcgcaagatcaccgacaatgccgaccgcaagcgcctc
aagtcgtccgtcgccgagctggaagtgccggaggggatgggcatcatcctgcgcaccgcc
gccgccagccgcaccaagaccgagatcaagcgcgacttcgagtacctgatccgcctgtgg
gagagcgtgcgcgacctgacgctcgcgtcgatcgcgccgcagctcgtctacgaggaaggc
aacctcgtcaaacgcgcgatccgcgacctctacaacaaggagatcgacgaggtcctggtg
tccggtgagcccgcctatcgcgaggccaaggacttcatgaagatgctgatgccgtctcac
gccaagaacgtgaagcggtacctcgagccgacgccgatcttcaccaagtacagcgtcgaa
tcgcagctcgacgcgatgttctccgaggtggtgacgctgccctccaagggctacctcgtc
atcaatccgaccgaggcgctcgtctcgatcgacgtgaactcgggccgctccaccaaggag
agcaacatcgaggacaccgcgctgaagacgaacctggaggccgccgacgaggtggcccgc
cagctcagactgcgcgacctcgccgggctcatcgtgatcgacttcatcgacatggacgag
aagcgccacaaccggcaggtggaaaagcgcctgaaggacgcgctgaagctcgaccgctcg
cgcatccaggtcggtcgcatctccccgttcgggctgctggagatgagccgccagcggatc
cgccagggcatggtcgagacctcgatggtgccgtgcgaggcgtgcggcggcaacggccac
gtgcgttccacgcagtcggtcgcgctgcactgcctgcgcgcgctggaggaccacctcctg
aagcacgccgaccacaacgtgaccatcaagacctcggcgacggtggcgctctacatcctc
aaccagaagcgccagcacctcaacgagctggaagagcgcttcgggctggagatcggcgtc
gacgcggacgagacgctgtcgggccagcaccttgccatcgtgccgggtgcgctggtggtg
cgcgagccgggcgtcgagccgcccaccgcgcagatcgcgcccgacgcggccatcgtcgag
catgacgacgaggacgagatcgaaggcgaggacgagagcacggtcgaggccgagagcgag
gccgagaccaccgaggcgcgggacgcctccggcgaacgctccgggtcgcgtcggcgtcgg
cgccggcggcggcggggcggcggcgccgacgatcgccgcgacgacgagagccgcggcaac
tccggcgacgaggacggcgcgcaggtcgcctccgacggcggtgacgccgtgaccggcgaa
gtcgaggccgagtccgacaccgaggacagcggcgccgaggataccggcgacggcgagatg
caggccgacggcgacgacgatcggcgtgggcgccgtcgtcgtgggcgccgcggcggccgc
cgccatcgccgcgacgaggacaccgccgaggacggcgagaccgccgaagccgcgccggtg
aacgagaccgaggccgccgcagcgccgcaagccccggagccggcggcgacgccggacgag
gcccccgcggccgaagccgccgcgcaggacgcccccgccgaagcggcgagcgccaacggc
gcggacaccgaggcggacgccgccgaggaaccggccgcagaggcggccgaggcaccggcg
ccggaacagaagtcggacggggcgcgcccgcgccgcgccggttggtggcagcgccgctcg
ttcttctga
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