Acinetobacter sp. TGL-Y2: AMD27_01910
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Entry
AMD27_01910 CDS
T04425
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
acv
Acinetobacter sp. TGL-Y2
Pathway
acv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
acv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AMD27_01910
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acv03019
]
AMD27_01910
03009 Ribosome biogenesis [BR:
acv03009
]
AMD27_01910
Enzymes [BR:
acv01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
AMD27_01910
Messenger RNA biogenesis [BR:
acv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AMD27_01910
Ribosome biogenesis [BR:
acv03009
]
Prokaryotic type
rRNA processing factors
AMD27_01910
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AMW77766
LinkDB
All DBs
Position
complement(413730..417278)
Genome browser
AA seq
1182 aa
AA seq
DB search
MKRMLINATHAEEVRVALITGHRLYDFDLENRTREQKKANIYKGHVTRVEPSLEAVFVEY
GAGRQGFLSMREIANSYYKADPRQTSNIRELITEGTELLVQVEKEERGNKGAALSTFISL
AGRYLVLMPNNPKGGGISRQISGAVREELKEMLASLNVPRGMSVIVRTAGIGRSQEELQL
DLQHLLDLWARIQTTSTSGPSPMLVHQEAGVVTRAIRDYLRDDVAEILIDSEQAYNEAYN
FVKAVMPNQLDKLKTYTLNEPLFAHFAIESQIQTAYEREVKLPAGGSIVIDQTEALVSID
INSAKSTRGHDVEDTALSTNLEAAEEIARQLRLRDIGGLVVIDFIDMTKERNQRMVEAKL
RESTQSDRARIQFGQLSRFGLMEMSRQRLRPSLEEATGYVCPRCHGTGMVRDLRSLSLSI
MRKVEEIALRERQGEVQVEVPVEIAAFLLNEKRHTLVYLEQTSNVRVTILPHPHLETPHY
EITYNAEGFAPTSYERTEATRSSEKELGYESSDWHLQEEPIVQTAPAASQQDKNIKRKNA
PAAQTSPVAAPAPVAQTQAIAPATSPCAWLENLFVQKQASTIDQSRTANNAAAAIEQMVN
GGAVSRGQFGQVSHATPVAVATPAVETNAYISHTSATKHEAREATERQLEKEDRPQRNNN
KKPRNNKPREQRELNHDHHVTEEVVQVPRHDQRVDQRQERHDPRQEQRQDSRHSEQRQER
LDTREQRQDPRQERRDPRQDPRHEPRNDVHQEPREQKPRHPKRQHQNDAQFDVAQPQDQQ
AIPRRERNAQRPQRPNRHRDPAALNEQAVVATPVVNAAPQVKVDVVEVPRHAEMKTALMV
NIDEVKSEIVALNSTQPETIVTPAEVAVPTSVETAPVIVSTPAEAKTATAVEAPQAEAIK
VTQDQQPVQRAANDPRQRRRNKHKDASKGKPVAPKVSPSQVPALAQHTVISLIRQVYGTD
CSVLIEQFGLIPTFNRALQKFADEYAATLAVTSTNSVTEKKPVTRDAVVSNAEVEAEPAP
VLDLTPPKPVTDTRVANDPRERRRLAKLAAEQAKQARLEEVAQVESTPSENPVEPVTEAP
VAETVEAVKVEPAIAEQEQPKPAQKAEKATQSKVKPQASVSTETAAVKPSEPKIKAEQPA
ETASEAHDEAKDDADTDEEDKPIRPRRPRGRPPKKVTPPTAE
NT seq
3549 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgtatgttgatcaatgcaacacatgccgaagaagttcgcgttgcactcatcact
ggtcaccgtctttacgattttgatttagaaaatcgtacacgtgaacaaaagaaagccaac
atctataaaggtcatgtgactcgcgtagagccttctttagaagctgtttttgtagaatat
ggtgcaggtcgtcaaggttttttgtcgatgcgcgaaattgccaattcctattacaaagct
gatcctcgtcaaacctctaatattcgtgaactgatcactgaaggcactgaacttcttgtt
caagtggaaaaagaagaacgtggcaataaaggtgctgccttgtctacgttcatctctttg
gcaggtcgttatttagttttgatgccaaacaatccgaaaggtggtggtattagccgtcaa
atttctggtgcagttcgtgaagaattgaaagaaatgttggcatctctcaacgtgcctcgt
ggtatgagcgtgatcgttcgtacagcgggtattggccgttcacaagaagagttgcaactt
gatttacaacatttgttagacctttgggcacgtattcaaaccacgtcaacttcaggtcca
tcgccaatgttggttcatcaagaagcaggcgtggtgacacgtgcgattcgtgactacctc
cgtgatgacgtggccgaaatcttaattgactctgagcaagcgtataacgaagcctataac
ttcgtaaaagcggtcatgcccaatcagttagataaattaaaaacctatactttgaatgag
cctttattcgcgcattttgcgatcgaaagccaaattcaaacagcctatgagcgtgaagta
aaacttcctgctggcggttcaattgtgattgatcaaacagaagccttggtatcgattgat
attaactctgcaaaatcaacacgtggccatgacgttgaagatacggcgctaagcaccaac
ttagaagcagctgaagaaattgctcgtcaacttcgtttgcgtgatattggtggtttagtc
gtgatcgactttatcgacatgaccaaagaacgcaaccaacgtatggttgaagcgaaactt
cgtgagtctactcaaagcgaccgtgctcgtatccaattcggtcaattgtctcgctttggc
ttaatggaaatgagtcgtcaacgcttacgtccttcacttgaagaagccacaggttatgtc
tgcccacgctgtcatggcacaggtatggttcgtgacctgcgttcactttcactttcgatc
atgcgtaaagtagaagaaattgcactgcgtgagcgtcaaggtgaagttcaagtggaagtc
cctgttgaaatcgcagccttcttattgaatgaaaagcgccacaccttggtataccttgaa
caaacctcgaatgtccgtgtgacaatcttgcctcacccgcacttagaaacaccgcattat
gaaatcacttataatgctgaaggtttcgcaccgactagctatgaacggactgaagcgaca
cgttcaagtgaaaaagagttggggtacgaatcttctgactggcatttgcaagaagaaccg
atcgttcaaactgcgcccgctgcatcgcaacaagataaaaatatcaaacgtaaaaatgcc
cctgctgcacaaaccagtccagtggcagcacctgcacctgttgctcaaacacaagctatt
gcacctgcaactagtccatgtgcatggttagaaaatttgtttgtgcaaaaacaagcatca
accatcgatcaatcacgcaccgcaaataatgctgccgctgcgattgaacaaatggtcaat
ggtggtgcggtaagccgtggtcaattcggtcaagtctcacatgctacacctgttgccgtc
gctactcctgctgttgaaaccaatgcgtacatttcacacacctctgcgactaagcatgag
gcacgtgaagcgactgaacgtcaacttgaaaaagaagaccgtccacagcgtaacaacaat
aagaaacctcgcaacaacaagccacgcgaacaacgcgaactgaaccacgaccatcatgta
actgaagaagtggttcaagtaccgcgtcatgatcaacgtgtagatcaacgtcaagaacgc
catgatcctcgtcaggaacagcgtcaagactcacgtcactctgagcaacgtcaagagcgt
cttgacacacgtgaacagcgccaagatccacgtcaagaacgtcgtgatccgcgtcaagac
ccacgtcatgaaccgcgtaatgatgttcatcaggaaccacgtgagcaaaagccacgtcat
ccaaagcgtcaacatcaaaatgatgcacaatttgatgtagctcagccgcaagatcaacaa
gcgattccacgtcgtgagcgcaatgcacagcgtccacaacgtccaaatcgccaccgtgat
ccagccgcattaaatgaacaagccgtagttgctacgccagtggtaaatgcagcaccgcaa
gtgaaagtggatgtggtggaagtacctcgtcatgcagagatgaaaaccgctctaatggtc
aacatcgatgaagtgaaaagcgaaatcgtggctttaaacagcacacagccagaaaccata
gttactccagctgaagtggctgtacctacctctgtagaaacagcacctgtgatcgtgtct
actcctgctgaagcaaaaacagcaacagctgttgaagcaccacaagctgaagcgataaaa
gtaactcaagatcaacaacctgtgcaacgcgcggcaaatgacccacgtcaacgtcgtcgc
aataagcataaggatgcatctaaagggaaaccggttgcgcccaaagtaagcccttcccaa
gttcctgctttggcacagcacacggtgataagtttaattcgccaagtttacggcacagat
tgttcagttctgattgaacaatttggtttaatcccgaccttcaaccgtgctttgcaaaaa
tttgcggacgagtacgcagcaaccttagcagtgacatcgactaactctgtcactgagaaa
aaaccagtgacacgtgatgcggtcgtttcaaatgcagaagttgaagctgaaccagcgcca
gtgttggatttaactccgcctaaaccagtgactgacacccgtgtagccaatgatccgcgt
gagcgccgtcgtcttgctaaacttgctgctgaacaagccaaacaagcacgcctagaagaa
gttgctcaagtcgagtctactcctagtgaaaatcctgtagagcctgtaactgaagcacct
gttgcagaaactgtggaagcggtaaaggttgagccagcgattgctgagcaagaacaaccg
aagcctgctcagaaagctgaaaaagcgactcagagcaaagtcaaacctcaagcgtctgta
agcactgagacagcagcggttaaaccttcagagcctaagatcaaagctgagcaaccagca
gagacagcaagcgaagcccatgatgaagcgaaagatgatgctgacaccgatgaggaagac
aaaccgattcgtccacgtcgtccacgtggtcgccctccaaaaaaggtaacaccaccgact
gctgagtaa
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