Acinetobacter sp. TGL-Y2: AMD27_08785
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Entry
AMD27_08785 CDS
T04425
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
acv
Acinetobacter sp. TGL-Y2
Pathway
acv03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
acv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AMD27_08785
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
acv03400
]
AMD27_08785
Enzymes [BR:
acv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AMD27_08785
DNA repair and recombination proteins [BR:
acv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AMD27_08785
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
SNF2-rel_dom
ERCC3_RAD25_C
Glyco_tran_WecG
RecG_dom3_C
UB2H
Motif
Other DBs
NCBI-ProteinID:
AMW78966
UniProt:
A0A143G5F3
LinkDB
All DBs
Position
complement(1841486..1844947)
Genome browser
AA seq
1153 aa
AA seq
DB search
MFQNEISQLNLKQLKNNEKRWVGTLAGSSAALLLKEISISSDRLLVLVARNNQHLGQLEN
ELEFYGIKPTIFPDWEILPYDRLSPHQDIVSERLAILSNMPKTGVLLLSSTTLVQRVSPT
SWVLGEHFDIKVGQKFDLEQQKMRLVQAGYHLVDTVYDHGEFAVRGSIMDIYASGQEAPI
RIDLFDDEIDSLKFFDPETQRTTTKLEYFTVLPAKEFPLKEARSVFRDRYAESFPTANPK
KNPIYQDVLEGIASPGLDFYFPLFFSKVAMQTQSSIASYLPSNSIVITDRHLKDEVTHFW
KEIYRRYEDRRHNQDQPLLPPEELFFSQNQIFEQLNQFSRMIVSSEAFDEKAGVINLPTA
ESPRLAVDPKHERPFHLVKQYIDAANHPVLLVAESAGRRESLKDSLRSSMGDIPVVENYQ
QFIQQQYSIAMTNAPLERGVVIENKLTVISENQLYEHRVVQRRRKRQQEVSEEFLVRSLT
ELSLGAPVVHIDYGVGRYAGLVTLSIDDQDYEFLQLDYADAAKVYVPVTNLHLISRYSGG
DPDLAPLHKLGTDAWNKAKRKALEQIHDVAAELLHIQARRKAKPGISFELDHTAYMQFAG
GFAYEETLDQVNAIEATLHDMQLAKPMDRLVCGDVGFGKTEVAMRAAFLAVQNNKQVAVL
VPTTLLAQQHFESFKDRFADWPIRIEVLSRFGTNKAHTKVIEDLINGKVDIVIGTHKILQ
ENVQFKSLGLMIVDEEHRFGVRDKERIKAMRADVDMLTLTATPIPRTLNMAFSGMRDLSI
IATPPARRLAVKTFVNEQTDATMKEAILRELLRGGQVYLLHNEVDSIERAAENIRTLVPE
ARVAVAHGQMRERELEQIMQQFYHKEYNVLVCSTIIETGIDVPNANTIIIERADKLGLAQ
LHQLRGRVGRSHHQAYAYLMVPSLKTLKGDAEKRLDAIQRASNLGAGFILATEDLEIRGA
GELLGEQQSGSMHAIGYSLYMEMLEKATKAIQQGKTPNFDAPLSLTSEINLHMPALIPDD
YLGDVHQRLLFYKRISNTDTQEKLDHIRMELIDRFGIPPIQVKQLFSVHQLRIKAEQLGI
TKIDLGAHGGNIEFSPDTPVQAISIIQMMQKHPTFFRMDGGQRLKVMVMLEDNAKRIQFA
DDLLTELLKGLNG
NT seq
3462 nt
NT seq
+upstream
nt +downstream
nt
atgttccaaaatgaaatttcacagctcaatttaaaacaacttaaaaacaatgaaaagaga
tgggtggggaccttggcaggatcctccgctgctttattgttgaaagaaatcagcatcagc
tcagatcgattattggtattggtggcacgcaataatcagcatttggggcagctggaaaat
gagctggaattttatggcataaagccgaccattttccctgattgggaaatcttgccttat
gatcgcttgtctccgcatcaagatatcgtctccgaacggttggcgattttatccaatatg
ccaaaaacaggcgtgttactgctgtcgagtaccactttggtacaacgggtttcgccgact
tcatgggtgttgggtgagcattttgatattaaagtcggtcaaaaattcgacctagaacaa
caaaaaatgcgtttggttcaggctggttatcatctagtcgataccgtctatgatcatggt
gagtttgctgtacgtggcagcatcatggatatctatgcctcaggtcaggaagctccaatt
cgtattgatttatttgatgatgagattgacagcttaaagtttttcgacccagagacgcag
cgcaccaccaccaaacttgaatatttcaccgtattgcctgctaaagaatttcctttaaaa
gaagcgcgttctgtatttagagatcgttacgcagaaagctttcctacggcaaatccgaag
aaaaatccgatttatcaggatgttttagaagggattgcatcacctggtctagacttttat
tttccattattttttagcaaagtagcgatgcaaacgcaaagtagtattgcttcgtactta
cctagtaattcgattgtcattacagatcgtcatttaaaagatgaagtaactcatttttgg
aaagaaatttatcgacgatatgaggatcgccgacataaccaagaccagcccttactgcca
cctgaagaattgtttttttcgcaaaatcaaatttttgaacaactcaatcagttttccaga
atgattgtgtcgagtgaagcctttgatgaaaaagcgggtgtgattaatctacctacggca
gaatcaccacgtttagcggtcgatccaaaacatgaacgaccgtttcatttagtcaagcag
tatattgatgctgcaaatcatcctgtattattggtggctgaaagtgcggggcgccgcgaa
tctttaaaggattctttgcgttcaagcatgggagatattcccgttgttgaaaattatcaa
caatttatccagcagcagtattccattgccatgaccaatgcgcctttagagcgaggtgtg
gtgattgagaataaactcacggtcatttctgaaaatcagctctatgagcatcgtgtggta
cagcgtcgccgtaaacgtcagcaagaagtctccgaagagttcttggtgcgcagtttgacc
gagctcagtctgggtgcacctgtggttcatattgattatggtgttgggcgttatgcaggg
cttgtgaccttgagcattgatgatcaagattatgagtttttacaactcgattatgcagat
gccgccaaagtctatgtgccggtcaccaatttacatttgattagtcgttatagtggtggt
gatccagatttagcaccactgcataagctgggtacggatgcatggaacaaagccaagcgt
aaagctttagagcaaatccatgatgtggcagcagaacttttgcatattcaggcgcgccgt
aaagccaaaccaggtattagttttgagctggatcatactgcttatatgcaatttgcgggc
ggttttgcctatgaggaaaccttagatcaagtcaatgcgattgaagcgaccttacatgat
atgcaactggccaagccgatggatcgtttggtgtgtggtgatgttggttttggtaagaca
gaagtggcgatgcgtgcagcatttctagcagtgcaaaataataagcaagtggctgttttg
gtgcccacaacattactggctcagcagcatttcgagtcttttaaagaccgttttgcagat
tggcccatccgtatagaggtattgtctcgttttggtaccaacaaagcacataccaaggtg
attgaagatttaatcaacggcaaagtggatattgtcattggaacacataagattctacaa
gaaaatgtccagtttaaaagtttaggactgatgattgtagatgaagagcatcgttttggt
gtgcgcgataaagagcgaatcaaggccatgcgtgcggatgtggatatgctgactcttaca
gcaacacctattccacggactttaaatatggccttttcgggaatgcgtgatctctcgatc
attgccacaccgcctgcacgtcgtttagcggtgaaaacctttgtcaatgagcaaactgat
gccaccatgaaagaggcgattttgcgtgagttgctgcgtggcggtcaggtgtatctgtta
cataatgaagtcgatagcattgagcgcgccgcagaaaatattcgaaccctcgtacctgag
gctcgggttgccgttgcgcacggtcaaatgcgcgaacgtgaacttgaacaaatcatgcag
cagttttatcacaaagaatataatgtactggtgtgttcaaccatcattgaaactgggatt
gatgtgcctaacgctaatacgattattattgaacgtgcagacaagttaggtttggcacag
ctgcatcaactgcgtggtcgtgttgggcgttcacatcaccaagcgtatgcttatctgatg
gtgccttcactcaaaaccttaaaaggtgatgcagagaagcgtttagatgcgattcaacgt
gcatcgaatctcggtgcaggctttatcttggccaccgaagatttagaaattcgtggcgca
ggcgagcttttgggggagcagcaaagtggctcaatgcatgcaatcggctatagcctctat
atggaaatgttggaaaaggcaactaaagccattcagcaaggtaaaaccccgaactttgat
gcaccgttatccctgacctctgagatcaacttgcatatgccggcactgattccagatgac
tatctgggtgatgtacatcagcgtctattgttttataagcgcattagtaataccgatacg
caagaaaaactcgatcatattcgcatggaactcatcgatcgctttggcattccaccgata
caggtcaaacagttgtttagcgtgcatcaattaaggataaaagcagagcaactggggatt
actaaaattgatttaggtgcacatggtggcaatattgagttttctcctgatacacctgtg
caagcaatcagtattatccaaatgatgcagaagcatccgaccttcttcagaatggatggg
ggacagcgcttaaaagtgatggtgatgctcgaagataatgccaaacgaatacaatttgca
gatgatttattgactgaacttttaaaaggattaaatggctaa
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