Acinetobacter sp. TGL-Y2: AMD27_15250
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Entry
AMD27_15250 CDS
T04425
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
acv
Acinetobacter sp. TGL-Y2
Pathway
acv03410
Base excision repair
acv03430
Mismatch repair
acv03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
acv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
AMD27_15250
03430 Mismatch repair
AMD27_15250
03440 Homologous recombination
AMD27_15250
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
acv03400
]
AMD27_15250
DNA repair and recombination proteins [BR:
acv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
AMD27_15250
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
AMD27_15250
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AMD27_15250
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
AMW80119
UniProt:
A0A143G7A1
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Position
complement(3188598..3190301)
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AA seq
567 aa
AA seq
DB search
MSSMLIRERPLLTSPEHFSGLSPLFAKILARRGVESAQQLELKLKYLLAPRMKGLDQAIA
MIDNAIDQQQKIVIVGDYDADGATSTTLMILALREMGADVEYLVPDRFKYGYGLTPAIAD
LVFVTYTPDLLITVDNGISSHAGVEQAQAHGMQVIITDHHLTTKAIPKAEAVVNPNQLGC
DFASKALAGVGVAFYVLANLSSQRAKQQKSTAKMTQYLDLVALGTYADVASLDYNNRILV
DSGVKRIQTGQCRAGILALLDIAGRDPAQIKAQDLGFVIGPRINAAGRMETMDIGIECLL
AEDMATAYPLARQLNELNLERRHVEAEMKQDALSAMQNLKIDHENMPSALIMFEEHWHQG
VIGIVAGRLKEQFHRPSIVFAADKDGIHIKGSARSIEGIHIRDCIEKVAEQYPHLVSFFG
GHAAAAGLTIKRENFAEFKDIFEKLIAETDAEIFQENLWTDGELDAVDFQVSTVQQIEKL
GPWGQKFPQPIFQGCFKVLEHRWLKDVHLKLKLALDNGQMVEGIAFNALDKFNFDGKKTH
VNLVYELDKNEFRGNVSIQLRVLHLAQ
NT seq
1704 nt
NT seq
+upstream
nt +downstream
nt
atgtcttctatgcttattcgtgaacgtccgcttttaaccagccctgagcatttttcaggt
ttatcgcctttatttgcaaaaattttggcacgccgtggggttgaatctgctcagcagtta
gagctgaaacttaaatatttacttgctccacgtatgaaaggcttagaccaagccattgcc
atgattgacaatgcgattgatcagcagcaaaaaatcgtcatcgtgggggattatgatgcc
gatggggcgaccagcaccacactgatgattttggcgctacgtgaaatgggcgcagatgtt
gagtatttagtccctgatcgttttaaatatggttatggtttaacacctgcgatcgcagat
ttggtttttgtgacttacacccctgatcttttgatcactgtggataacggtatttccagt
catgcaggggttgagcaggcgcaagcgcatggtatgcaagtgatcattaccgatcatcat
ttgacgaccaaagcaatcccaaaagcagaagctgtagttaatccgaatcagttaggctgt
gattttgcaagtaaggctttggctggagtgggcgttgccttttatgtgttggcaaatttg
agcagtcagcgtgctaaacagcaaaaatcgactgcaaaaatgactcaatatttagacttg
gttgcactaggtacctatgccgatgttgcaagtttagattataacaaccgcatcttggtg
gattcaggtgtaaagcggattcaaactgggcaatgtcgcgctggaattcttgcactcttg
gatattgcaggacgtgatcctgcacagatcaaagcacaagatttaggtttcgtgattggt
ccgcgtattaatgcagcagggcgtatggaaaccatggacattggcattgaatgtctgttg
gctgaagatatggcaacagcatatccgcttgcacggcagttaaatgagcttaatttagaa
cgccgtcatgtcgaagctgaaatgaaacaagatgctttgtctgcgatgcaaaatctaaag
attgatcacgaaaatatgccctcggccctgattatgtttgaagagcattggcaccaaggg
gtgattggcattgttgccgggcgtttaaaagagcagtttcatcgaccaagtattgtcttc
gctgcggataaagacggcatccatatcaaaggctctgcacgttccattgaaggcattcat
atccgagattgtattgaaaaagtcgcagagcaatatccacatttggtcagcttttttggg
gggcatgcagcagcggcaggactcacgatcaaacgtgaaaactttgctgaatttaaagat
atctttgaaaaactgattgcagaaacagatgctgagattttccaagaaaatctatggaca
gatggcgaattagacgcagtcgactttcaagtcagtacggttcagcaaattgagaaattg
ggtccatgggggcaaaaatttccacagcccatttttcaaggttgttttaaagtgttagag
catcgttggctcaaagacgtgcatttgaagttaaaactcgctttagataatggtcaaatg
gttgaaggcattgcatttaatgcattagataagtttaattttgatggaaaaaagacacat
gtcaatctggtctatgaactggataagaatgagtttagaggcaatgtcagcatacagctt
cgagtgctgcatttagcccaataa
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