Azotobacter chroococcum: Achr_38190
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Entry
Achr_38190 CDS
T03640
Name
(GenBank) DEAD/DEAH box helicase domain-containing protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
acx
Azotobacter chroococcum
Pathway
acx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
acx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Achr_38190
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acx03019
]
Achr_38190
Enzymes [BR:
acx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Achr_38190
Messenger RNA biogenesis [BR:
acx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Achr_38190
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_25
Motif
Other DBs
NCBI-ProteinID:
AJE23206
UniProt:
A0A0C4WR87
LinkDB
All DBs
Position
4248846..4250645
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AA seq
599 aa
AA seq
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MSFASLGLSEALVRAVEAAGYAQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPVL
ERLFPGGHPDKEHRHGPRQARVLVLTPTRELAAQVHDSFKLYARDLKLVSACIFGGVGMN
PQVQALSRGVDVLVACPGRLLDLVGQGSVDLSHVEILVLDEADRMLDMGFIHDVKKVLAR
LPAKRQNLLFSATFSQDIINLTNKLLHDPERIEVTPPNTTVERIEQRVFRLPASHKRALL
AHLVTQGAWEQVLVFTRTKHGANRLAEYLDKHGLPAAAIHGNKSQNARTKALADFKSSAI
RLLVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDEEKL
LKSIERMTRQSIPQGDWAGFDISAVEAEKPEVREPHPPRNAGSAGRKDKGKDKGQEKPRE
KTQEKARGKEQPRQARGGGQPNRPAQKAKEQPARQATAPGLPPNRDPEEFLDDEVDNFGN
RADYVSPYQNKQQRGRRPGAPGQTAGANRGQAQNQGPRPPKRQGQGQGQGSGQPRRAPVP
AYRSEQPREEAPRKPERQPLILHKESKGDRFPTPEQLDQLTERRPRSEKPALLTRNREE
NT seq
1800 nt
NT seq
+upstream
nt +downstream
nt
atgtcctttgcttccctcgggctctccgaggcattggtccgcgccgtcgaggccgccggc
tatgcccagcccactcccgtgcaacagcgggccatccccgccgtgttgcagggccgcgat
ctgatggttgccgcccagaccggcaccggcaagaccggcggcttcgcccttcccgtactc
gaacgactgttccccggcggccatcccgacaaggagcatcgccacggcccgcgccaggcc
cgcgtgctggtgctgaccccgacccgcgaactggccgcccaggtgcacgacagcttcaag
ctctacgcccgcgacctgaaactggtcagcgcctgcatcttcggcggggtcggcatgaac
ccgcaggtccaggccctgtcccgcggcgtcgacgtgctggtggcctgtcccggacgcctg
ctcgacctggtcggccagggtagcgtcgacctctcccacgtggagatcctggtgctcgac
gaagccgaccgcatgctcgacatgggcttcatccacgacgtgaagaaggtcctcgcccgg
ctgccggccaagcggcagaacctgctgttctcggcgaccttctcccaggacatcatcaac
ctcaccaacaagctgctgcacgatcccgaacgcatcgaggtgacgccgccgaacaccacg
gtggaacgcatcgagcagcgcgtcttccgtctgccggccagccacaagcgcgccctgctc
gcccacctggtcacccagggcgcctgggagcaggtgctggtgttcacccgcaccaagcac
ggcgccaaccgtctcgccgaatacctcgacaagcacggcctgccggctgcagcgatccac
ggcaacaagagccagaacgcccgcaccaaggccctggccgacttcaagagcagtgccatc
cgcctgctggtggccaccgacatcgccgcccgcggcctggacatcgaccagttgccccat
gtggtcaacttcgaactgcccaacgtcgaggaggactacgtccaccgcatcggccgcacc
ggccgcgccgggcgcagcggcgaggcgatctcgctggtcgcgccggacgaggagaagctg
ctcaagtcgatcgagcgcatgactcgccagagcatcccgcagggcgactgggcgggcttc
gacatcagcgctgtcgaggcggagaagcccgaggttcgcgagccgcacccgccgcgcaac
gccggcagcgctggtcgcaaggacaagggcaaggacaagggccaggaaaaaccccgggag
aaaacccaggagaaggcccgcggcaaggaacagccccggcaggccaggggcggcggccag
ccgaaccggccggcgcagaaggccaaggaacaacccgcccgccaggcgacggcccccggc
ctgccgccgaatcgcgatcccgaggagttcctcgacgacgaggtcgacaacttcggcaac
cgcgccgactacgtcagcccctaccagaacaagcagcagcgcggccgccgtcccggcgca
cccggccagacggccggcgccaaccgcggccaggctcagaaccagggcccgcgccctccg
aagcgccaggggcagggtcagggccagggctccggccagccgcgccgcgctccggtacca
gcctaccgcagcgagcagccccgcgaggaagcgccgcgcaagccggagcggcagccgctg
atcctgcacaaggagtcgaagggcgaccgcttccccaccccggaacagctcgaccagctg
acggagcgccgcccacgcagcgagaagccggcgctgctgacgcgcaaccgcgaggagtga
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