Azotobacter chroococcum: Achr_5350
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Entry
Achr_5350 CDS
T03640
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
acx
Azotobacter chroococcum
Brite
KEGG Orthology (KO) [BR:
acx00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
acx03016
]
Achr_5350
Enzymes [BR:
acx01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Achr_5350
Transfer RNA biogenesis [BR:
acx03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Achr_5350
Prokaryotic type
tRNA splicing ligases
Achr_5350
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
AJE20040
UniProt:
A0A0C4WLM6
LinkDB
All DBs
Position
585601..587031
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AA seq
476 aa
AA seq
DB search
MNLSQFRQRGPFEWELPASGRMRVPGVIFASQALVEAMDDKVGEQVANVASLPGIVEASY
AMPDAHWGYGFPIGGVAAFDAEEGGVVSAGGVGFDISCGVRSLHTGLGLADLAALKTRLA
DVLYRRIPAGLGSTGALRLRPQEMSAMLRGGAKWAVEEGFGSEADLARIEESGCMAGADP
SAVSEQAKKRQRDEMGTLGSGNHYLEVQVVDALFDAMAAQAYGLAEGDVLVTIHCGSRGM
GHQIGTDYLRAMVIAAAQAGIALPDRELACAPLKSELGQRYLGAMRAAINCALANRQILT
QLAREAFAELFPGIAMPLLYDVSHNTCKEERHLVGGRHRRLFVHRKGATRAFAAGHAELP
AEYRQVGQPVLIGGSMGTSSWVLAGAGGDEERAFASACHGAGRAMSRHEALRRWQGRAVV
DELAGRGILIRSPSLRGVAEEAPLAYKDVGAVVEAAEQAGLARRVARLRPLVCIKG
NT seq
1431 nt
NT seq
+upstream
nt +downstream
nt
atgaacctctcgcagtttcgccagcgcggccccttcgaatgggagctgccggccagtggg
cggatgcgcgtgccgggggtgatcttcgcctcgcaggcactcgtcgaggcgatggacgac
aaggtcggcgagcaggtcgccaatgtcgccagcctgccgggcatcgtcgaggcctcctac
gccatgcccgatgcgcactggggctacggcttcccgatcggcggggtggcggccttcgat
gccgaggagggcggagtggtgtcggccggcggggtcggcttcgacatctcctgcggggtg
cgcagcctgcacaccggactcgggctggccgacctggcggcgctgaagacgcgcttggcc
gacgtgctctaccggcgcatcccggccggactcggcagcaccggcgcgctgcgcctgagg
cctcaggagatgagcgccatgctgcgcggcggcgcgaagtgggcggtcgaggaaggcttc
ggcagcgaggccgatctggcgcgcatcgaggagtccggctgcatggccggcgccgatcct
tccgccgtctcggagcaggcgaagaagcgccagcgcgacgagatgggcaccctcggctcg
ggcaaccactatctggaggtgcaggtggtcgacgcgctgttcgatgcgatggcggcccag
gcctacggtctggccgagggcgacgtgctggtgaccattcattgcggctcgcggggcatg
ggccaccagatcggcaccgactacctgcgcgccatggtgatcgccgccgcgcaggcgggc
atcgccctgccggatcgcgagctggcctgcgcgccgctgaagtccgagctgggccagcgt
tatctcggcgccatgcgcgcggcgatcaactgcgcgctggccaaccggcagatcctcacc
cagctagcgcgcgaggcctttgccgagctgttccccggcattgccatgccgctgctctac
gacgtgtcgcacaacacctgcaaggaggagcgccacctcgtcggcggccggcaccggcgc
ctgttcgtccatcgcaagggggcgacgcgcgctttcgccgccgggcatgccgagctgccg
gcggagtaccgccaggtcggccagccggtgctgatcggcggcagcatgggcacttcgtcc
tgggtgctggccggcgcgggcggcgacgaggaacgcgccttcgcctcggcctgccacggc
gccgggcgggcgatgagccgccacgaggcgctgcgccgctggcaggggcgcgcggtggtg
gacgaactggcggggcgcggcatcctgatccgcagtcccagcctgcgcggcgtggccgag
gaggcaccgctggcctacaaggacgtcggcgcggtggtcgaggccgccgaacaggcgggg
ctggcgcggcgggtggcgcggctcaggccgctggtgtgcatcaagggctga
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integrated database retrieval system
