Alicyclobacillus cycloheptanicus: JI721_07715
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Entry
JI721_07715 CDS
T08830
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
acyc
Alicyclobacillus cycloheptanicus
Pathway
acyc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
acyc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
JI721_07715 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
acyc03021
]
JI721_07715 (rpoC)
03400 DNA repair and recombination proteins [BR:
acyc03400
]
JI721_07715 (rpoC)
Enzymes [BR:
acyc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
JI721_07715 (rpoC)
Transcription machinery [BR:
acyc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
JI721_07715 (rpoC)
DNA repair and recombination proteins [BR:
acyc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
JI721_07715 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
WDM02637
LinkDB
All DBs
Position
1675432..1679067
Genome browser
AA seq
1211 aa
AA seq
DB search
MLDVNNFEFMKIGLASPEKIRSWSHGEVKKPETINYRTLKPEKEGLFCEKIFGPQRDWEC
HCGKYKRVRYKGVVCDRCGVEVTRAKVRRERMGHIELAAPVSHIWYFKGIPSRMGLVLDM
SPRALEEVIYFASYVVTDPGDTPLEKKQLLSEKEYRSYREKYGYAFQAGMGAEAIRKLLL
DIDMDREVEMLKEELRTAQGQRRNRAIKRLEVLEAFRNSGNHPSWMILEALPVIPPDLRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPDIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELRMFQCGLPKE
MALELFKPFVMKELVSRGLAHNIKSAKRKVERVSPEVWDVVEDVIKEHPVLLNRAPTLHR
LGIQAFEPVLVEGRAIKLHPLVCTAYNADFDGDQMAVHVPLSAEAQAEARLLMLAAHNIL
NPKDGKPVVTPTQDMVLGPYYLTIEKRGAPGEGRIFADPFEVYMALQHHEITLHSRIALP
AASLGKTSFTPAQQNGMLLTTPGKLIFNEVFPADFPYLNSAAKSNLLEGAPDETFVLEKG
VNIRERIEARPIPKPIIKKDLGNILGECFRRYGTTMTSEILDKVKKLGFHYSTRAGITIS
VADIIVPEEKAKIIEEAEARDHRLMQQYRRGLITEEERYVSFSQIWTEAKEKLSQTLMTS
MDEFNSIYMMATSGARGSNSQITQLAGMRGLMANPSGRIIELPIKSNFREGLTVLEYFIS
THGARKGLADTALRTADSGYLTRRLVDVAQDTIVRQVDCGTDKGLRVAEIRDGKEVIEDL
ADRLEGRVAFQDVYHPETGEKIVSKNELIDAEAATAIVEAGIKEVTIRSVLTCRTRHGVC
VQCYGRNLATGKMVEIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQEL
FEARNPKGQAVITEFDGVVTDIREAKDKREVEVTGESETKVYAIPYGSRIRVSINQPVEA
GDELTEGSVDPKEMLRVKGLQGVQNYLLREVQRVYRLQGVDINDKHVEVMVRQMLRKVRI
LDAGDTDLLPGAYVDLFDYEQENRKALLAGGEPAVARPALLGITKASLETDSFLSAASFQ
ETTRVLTEAAIKGKVDRLLGLKENVIIGKLIPAGTGMSRYRHIEVVAPAEETEAPADEAE
STDDPVPVSES
NT seq
3636 nt
NT seq
+upstream
nt +downstream
nt
ttgctggatgtcaacaacttcgagtttatgaagattgggctcgcctcaccggaaaaaatc
cggtcctggtcgcacggtgaagtgaaaaagccggagacgatcaactaccggacgctgaag
cctgaaaaggaaggcttgttctgcgaaaagatttttggtcctcagcgcgactgggagtgc
cactgcggaaaatacaagcgggttcgttacaagggcgttgtctgtgaccgctgcggcgtg
gaagtgacccgtgccaaggtgcgccgggagcgcatgggccacatcgaactggctgcgccg
gtctcgcacatctggtacttcaagggcattccgagccgcatgggcctggtgctcgacatg
tcgccgcgcgcactcgaagaggtcatttacttcgcttcctatgtggtgaccgacccgggc
gatacgccgctcgagaagaagcagctgctcagcgagaaggagtatcgttcctatcgcgaa
aagtacggctacgccttccaggctggcatgggcgcggaggcgattcgcaaactgctcctg
gacatcgatatggacagggaagttgagatgctcaaggaggagttgcgcaccgcgcaggga
caacgccgcaatcgagccatcaagcggcttgaagtactggaggcgttccgcaattcgggc
aaccatcccagctggatgattctcgaagcgctgcccgtgatcccgccggatttacggccg
atggtgcagctggacggcggccggtttgcgacctccgacttgaacgacctgtaccgccgg
gtcatcaaccgcaacaatcgtctgaagcgtctgcttgacctgggggcgccggacatcatt
gtgcaaaacgaaaagcgcatgctgcaggaagccgtggacgcgctcatcgacaacggccgc
cgcggccgtccggtgacagggcccggcaaccgcccgctgaaatccttgtcgcatatgctc
aagggtaagcagggccggttccgtcagaacctgctcggaaagcgcgtcgactactccggc
cgttccgtcattgttgtcggaccggaactgcgcatgttccaatgcggtttgccgaaagaa
atggcgctcgagctgtttaagccgttcgtgatgaaagaactggtgtcccgcggactcgca
cacaacatcaagagtgcgaagcggaaagtggagcgcgtctcgcctgaggtgtgggacgtc
gtggaggatgtcatcaaggagcatcccgtgctcttgaaccgcgcaccgacactgcaccgc
ctgggcattcaggcgttcgaaccggtgctggtggaagggcgcgcgattaagctgcatccg
ctcgtctgcaccgcctacaacgcggacttcgacggcgaccagatggctgtgcacgtgccg
ctgtctgccgaggcgcaggcggaagcccgtctgctcatgctggcggcgcacaacatcctg
aacccgaaagacggcaagccggtcgtcacgccgacgcaggacatggtgctgggtccgtac
tacctgaccatcgaaaagcgcggcgcaccgggcgaaggccgaatctttgccgacccgttc
gaagtgtacatggcgctgcagcaccatgagatcacgctgcacagccggatcgccctgccg
gcggcatcgctgggcaagacgtcctttacgccggctcagcagaacggcatgctgctgacg
acgcctggcaagttgatcttcaacgaagtgttcccggccgacttcccgtacctgaactcg
gcggcgaagagcaacctcttggagggggcgccggacgagacgtttgtcctggagaagggc
gtcaacatccgcgagcggattgaagcgcggccgattccgaagccgattatcaagaaggac
ctggggaacatcctcggcgagtgcttccgccgctacggtacgacgatgaccagtgagatt
ctggacaaagtcaagaagctgggtttccattactcgacgcgggccggcatcaccatctcc
gtcgcggacatcatcgtgccggaggagaaggcgaagatcatcgaagaggcagaagcccgc
gaccatcgcctgatgcagcagtaccgccgcggtttgattacggaagaagaacggtacgtc
tcgttcagccaaatctggacggaagcgaaagagaagctgtctcagacgctgatgaccagc
atggacgagttcaactccatttacatgatggcaacgtccggtgcgcgcggcagcaactcg
cagatcacgcagctcgcaggcatgcgcggtttgatggccaacccgtccggccgcatcatc
gagctgccgattaagtcgaacttccgcgaaggcctgacggtgttggagtacttcatctcc
acgcacggtgcgcggaaagggctggcggacacggcgctgcggaccgctgactccggttac
ctgacgcgccgcctggtggacgtggcgcaggataccatcgttcgccaggtggactgtggc
acggacaagggcttgcgcgtggcggaaatccgcgacggcaaagaagtcattgaagatctc
gccgaccgcctcgaaggccgcgttgccttccaggatgtgtaccatcccgagaccggtgag
aaaattgtctcgaagaacgagctgattgatgcggaagctgcgacggcgattgtcgaagcc
ggcatcaaggaagtcacgattcgctccgtcctgacatgccgtacgcgtcacggcgtctgc
gtccagtgctatgggcgcaacctcgcgaccggtaagatggtcgagattggcgaagcggtc
ggaattattgccgcgcagtccatcggtgagccgggtacgcagctgacgatgcgcacgttc
cacacgggcggtgtcgcaggcgacgacatcacccagggtctgccgcgtattcaggaattg
ttcgaagcgcgcaacccgaaaggtcaagccgtgatcaccgagttcgacggtgtggtcacc
gacattcgcgaagccaaggacaagcgcgaggtggaagtgacaggcgagagcgagacgaag
gtctacgccatcccgtacggctcgcgcatccgcgtctcgatcaaccagccggtggaggcc
ggggacgagttgacggaaggctccgtcgacccgaaggaaatgctgcgcgtcaagggtctg
caaggcgtacaaaactacctgctgcgtgaagtgcagcgcgtataccggctgcagggcgtg
gatatcaacgacaagcacgtcgaggtcatggttcggcagatgctgcgcaaggtccgcatc
ctcgacgcgggcgataccgacctgcttcccggcgcgtatgtagacctgttcgactacgag
caggagaaccgtaaagcgctgctggctggcggagagcctgctgtggcacggccggcgctg
ctcgggattacgaaggcgtcgcttgagacggactccttcctgtccgcggcgtcgttccag
gagaccacgcgtgtcctgacggaggccgccatcaagggcaaggtcgaccggctgctgggc
ttgaaggagaatgtgattattggcaagctcatcccggctggaaccggtatgtctcggtac
cggcacatcgaggtggtcgcgcctgctgaagagacggaggcgcctgcggacgaagctgag
tccacagatgacccggtgcctgtctctgagtcctga
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