Alicyclobacillus cycloheptanicus: JI721_09295
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Entry
JI721_09295 CDS
T08830
Symbol
rpoN
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
acyc
Alicyclobacillus cycloheptanicus
Pathway
acyc02020
Two-component system
acyc02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
acyc00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
JI721_09295 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
JI721_09295 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
acyc03021
]
JI721_09295 (rpoN)
Transcription machinery [BR:
acyc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
JI721_09295 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_IclR
HTH_17
Xre-like-HTH
HTH_AraC
HTH_Crp_2
HTH_3
MarR_2
HTH_23
Sigma70_r4
HTH_38
Phage_CII
HTH_Tnp_4
DUF3606
Motif
Other DBs
NCBI-ProteinID:
WDL99968
LinkDB
All DBs
Position
2009590..2010945
Genome browser
AA seq
451 aa
AA seq
DB search
MSVGYGQGYGLYQEQAQKLMMTQQMQQAITMLQCSAVELDQYIQTELASNPLAEVRPVAV
EWQMPAGIFTGGGRIASRSTGYSERQAPPLEQTLRSEATLADLLEEQIRLTACDSQVAHT
AKRLIGSLDENGYLRETPEELAHWTGAPLELIHKAIELLQSCDPAGIAARDLQECLTLQL
HLVPTEQRALAGQLIDHHLEEIAAGRISHLARALHVTTQEVQAAIDAIRQLNPRPGAGLV
EERPAYIIPDVIVERVGGQYVVMTNESAQPSVRLDAAYRRWMRAADAETRQYLSRKVQAV
EWIVRCLEQRRVTLHRVAEAIVQAQMDFLDRGPIAMRPLTLRQIADTLGVHESTVSRATR
NKYMQTPRGVFEMKYFFTAELASSDGGAAASAEAAKHAIRQLIDAEDPAHPLSDGALCDR
LASQGIHLSRRTVAKYREAMRIPSSSRRRRF
NT seq
1356 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtcggctatggccaaggctatgggctgtatcaggagcaggcgcagaaactcatg
atgacccagcagatgcagcaggcaatcaccatgttgcaatgttctgccgtggaacttgac
caatacatccaaaccgaacttgccagcaatccattggcggaagtgcggccggtggccgtg
gagtggcagatgccagccggcatcttcaccggcggaggacgcattgccagccgatcgacg
gggtacagcgagcgccaagctccgccgctggagcagaccctgcgcagcgaggcaacgctc
gccgacctcttggaggagcaaattcggctcaccgcgtgtgattcgcaggtcgctcacacc
gccaaacgcctgattggcagtctggatgaaaacggttacctgcgagaaacgccggaagag
ctggcacattggaccggcgcgccgcttgagctgattcacaaagccatcgaactgctccaa
tcgtgtgatcccgccgggatcgccgcccgcgacctgcaagaatgtctcaccctgcaattg
cacctcgtacccaccgagcagcgagcccttgcgggccagctgatcgaccatcatttggag
gaaatcgcggccggccgtatctcacacctggcccgcgcccttcatgtcaccacccaggaa
gtgcaggcggcgattgacgccatccgccagctcaacccccgtcccggggctggtcttgtc
gaggagcggcctgcgtacatcatcccggacgtcattgtcgagcgcgtgggcggccagtac
gtcgtcatgacgaacgaatccgcccagccgagcgtccgcctggatgcggcgtaccggcgg
tggatgcgcgcggcggatgccgaaacccgccagtacctgtcccgaaaggtgcaggccgtg
gagtggatcgtacgctgtctggaacagcggcgcgtcacactgcaccgggttgcggaggcc
attgtccaggcccaaatggattttctcgatcgcggtcctatcgcgatgcgccccctcacg
ctccgccagattgccgacacgctgggcgttcacgaatccacggtcagccgggcgacgcgc
aacaagtacatgcagaccccgcgcggcgtgttcgaaatgaagtatttcttcaccgccgaa
ctggcgagttcagatgggggtgcggccgcgtctgcggaggctgcgaagcacgccattcgc
cagttgattgacgcggaagatcccgcccatccactgtccgatggagccctgtgcgatcgc
ctggcgtctcagggcattcacctctcccggcgaaccgtcgccaagtaccgcgaggcgatg
cgtattccatcttcgtcccggcggaggcggttttag
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