Alicyclobacillus cycloheptanicus: JI721_13890
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Entry
JI721_13890 CDS
T08830
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
acyc
Alicyclobacillus cycloheptanicus
Pathway
acyc02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
acyc00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
JI721_13890 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
acyc03021
]
JI721_13890 (rpoD)
Transcription machinery [BR:
acyc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
JI721_13890 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r1_1
Exonuc_VII_L
FAM176
DUF4315
HTH_20
Glyoxalase
COPI_C
Motif
Other DBs
NCBI-ProteinID:
WDM00771
LinkDB
All DBs
Position
3012742..3013878
Genome browser
AA seq
378 aa
AA seq
DB search
MKEIQREAAREEERGLTLQDAKAALVQLGKRRGSLTYTEIVNRLGAFDLDPDQLDEFFDH
LSEQGVDVINERDDEEDEDDESQERDQEEERFDLNDLTMPPGVKISDPVRMYLKEIGRVP
LLSAAEEIELAKRIEEGDEEAKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIK
AVEKFDYRKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRISRQLLQEL
GREPTAEEIAAEMDMTPEKVREIQKIAQEPVSLETPIGEEDDSHLGDFIPDDEAPAPADA
AAYELLKEQLEDVLDTLTEREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKA
LRKLRHPSRSKRLKDFLE
NT seq
1137 nt
NT seq
+upstream
nt +downstream
nt
atgaaagagatacaaagagaagcggcccgcgaagaggaacgtggactgacccttcaggat
gcgaaagctgcgctggtgcagttgggaaaacggcgtggttcgttgacttatactgaaatc
gtcaatcgactcggcgctttcgacctcgatccggaccagttggatgagttctttgatcac
ctgtccgagcagggggtggacgtgatcaacgaacgcgacgatgaagaagatgaggacgat
gagagccaggagcgcgaccaggaagaggagcgctttgatctgaatgacctgaccatgccg
cccggtgtcaaaatcagcgacccggttcggatgtacctgaaggagattggccgtgttcct
ttgctctccgctgcagaggagattgagcttgccaagcggattgaagaaggagacgaagaa
gccaagcggcggctcgcggaagccaaccttcgcctggtggtcagcatcgcaaagcggtac
gttggccgtgggatgctgttcttggatttgattcaggaaggtaatttggggctcatcaaa
gccgtggagaagtttgattaccggaagggttacaagttcagcacgtatgcaacctggtgg
attcggcaggccatcacacgggcgattgccgaccaggcgagaacgattcggattcctgtg
catatggttgaaaccatcaacaagctgattcgcatctcgcgtcagctgcttcaggaattg
ggacgtgagccgaccgccgaggaaattgctgcggagatggacatgacaccggaaaaggtg
cgcgaaatccagaagatcgctcaggagcccgtttcgttggaaacgccgattggtgaagag
gatgactcgcacttaggggactttatccctgacgatgaggcgcctgcgccggcggacgct
gcagcgtacgagctgctgaaggaacaattggaagacgttctggacaccctcacagaacgg
gaagagaacgtcctgcgcttgcggttcggactggatgacggcagaacgcggacgttggag
gaagtaggcaaggtctttggcgtgacgcgggaacgcatccgccaaatcgaggccaaagcg
ttgcgcaaactccggcatccaagcaggagcaagcggttgaaggacttcctcgaataa
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