Alicyclobacillus cycloheptanicus: JI721_16725
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Entry
JI721_16725 CDS
T08830
Symbol
ligD
Name
(GenBank) non-homologous end-joining DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
acyc
Alicyclobacillus cycloheptanicus
Pathway
acyc03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
acyc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
JI721_16725 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
acyc03400
]
JI721_16725 (ligD)
Enzymes [BR:
acyc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
JI721_16725 (ligD)
DNA repair and recombination proteins [BR:
acyc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
JI721_16725 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
mRNA_cap_enzyme
Replic_Relax
DUF6128
Motif
Other DBs
NCBI-ProteinID:
WDM01271
LinkDB
All DBs
Position
3538790..3539764
Genome browser
AA seq
324 aa
AA seq
DB search
MDVEPLVPMEPVRVDIIPTGSDWVSQVKWDGVRVLTYAMAGHVELYNRRRRRRTLHYPEL
VDCKRYCDADAVILDGEVVALGANGTPDFHQVMKRDAIRRFERVPVVQRAVPIHYMVFDI
LYYNGQWLTDRPFGDRFALLERVIRPSDVVQVVTTTNDGPALYQAMETFDMEGIVAKRVD
STYRIGEKVDTWRKIKRYRDLVAVIGGYTLGDNGVINALLLGMYDEAGALHYIGHVGTGR
LTQEEWRSLTTRLQALAAQNRPFAEPPSRSRSGSAPVHWVLPVVTVKVHYAEWTRGRSLR
QPSVQSITNIPPTACILRADLMRP
NT seq
975 nt
NT seq
+upstream
nt +downstream
nt
atggacgtggagccgctggtgccaatggaaccggtccgggtggacatcatccccaccgga
tcggactgggtttcgcaagtcaagtgggatggtgttcgcgtgttgacgtacgcgatggcg
ggtcatgtcgagttgtataatcgcagacggcgccggcgcaccctgcactatcccgaactc
gttgactgcaagcgttattgcgatgcagacgccgtcatcttggatggagaggttgtcgcg
ctgggcgccaacggaacgccggattttcatcaggtcatgaagcgggacgccatcaggcga
ttcgagcgcgtgcctgtcgtgcagcgtgcggtgcccatccactacatggtcttcgacatc
ctctattacaacggccagtggctcacggaccggcctttcggcgaccgctttgcgctgctc
gaacgcgtgattcgcccgagtgacgtcgttcaggtggtgacgaccaccaacgacgggccc
gcactgtaccaggccatggaaacgttcgatatggaaggcattgtcgccaaacgggtggac
tctacctaccgcattggcgaaaaagtggacacctggcgcaagattaagcggtatcgcgac
cttgtggcggtcatcgggggatacacgctcggcgacaacggcgtgatcaacgcgctgctg
ctgggcatgtacgacgaggcaggcgccttgcattacattggacacgtggggaccgggcgc
ctgacgcaggaagagtggcgttccctgacgacccgtctgcaggcattggccgcacaaaac
cgccccttcgccgagccgccgtcccgctccagaagcggcagtgcacccgtgcattgggtg
ttacccgtcgtgaccgtgaaagtccattacgcagagtggacgcgcggccgctcgctccgc
cagccaagcgttcaatccatcacgaacattccgccgacggcgtgcatcctccgcgccgac
ctgatgcgaccctga
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