Anser cygnoides (swan goose): 106034400
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Entry
106034400 CDS
T04896
Symbol
PCDH1
Name
(RefSeq) protocadherin-1 isoform X1
KO
K16498
protocadherin delta 1
Organism
acyg
Anser cygnoides (swan goose)
Pathway
acyg03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
acyg00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
106034400 (PCDH1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
acyg01009
]
106034400 (PCDH1)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
acyg04515
]
106034400 (PCDH1)
Protein phosphatases and associated proteins [BR:
acyg01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
106034400 (PCDH1)
Cell adhesion molecules [BR:
acyg04515
]
Cadherins
Protocadherins
106034400 (PCDH1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_2
Cadherin_CELSR2_9th
Cadherin_4
K319L-like_PKD
TMEM154
Mid2
MLANA
Syndecan
Motif
Other DBs
NCBI-GeneID:
106034400
NCBI-ProteinID:
XP_066861603
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Position
14:12814069..12862220
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AA seq
1219 aa
AA seq
DB search
MQTPLDQRSGDRPHPTPLRRRMRPLASCLGLWLLCQLPALVCGTRVVYKVQEEQPPNTLI
GSLASDYGFPDVGHLYKLEVGAPYLRVDGKTGDIYTTETSIDRESLRECQHLLPGEPCYL
EFEVSITDLIMNSSPRLLEGQIEVLDINDNTPNFASPVLTLTIPENTNIGALFSIPPAMD
RDSGPNGVASYELMAGPEAQELFGLQVAEDQDEKQPQLIVMGNLDREQWDSYDLTIKVQD
GGSPPRASSALLRITIVDMNDNAPKFEKALYEAELSENSPVGHSVLQVKANDSDQGANAE
IDYSFHQASDMVRRLLRLDRATGLITVQGPIDREDVSILKFSVMAKDKGANPKSARTQVV
VTIKDMNDNAPSIEIRGIGLVTHQDGMANISEDVPVETAVALVQVSDRDEGENAVVTCVV
AGDVPFQLRQASETGSDSKKKYFLQTTTPLDYESVKDYTIEIVAVDSGNPPLSSTNSLKV
QVVDVNDNAPVFSQSFTEVAFPENNEPDDLVMEVSASDADSGSNAKLVYSLVTDPSSKGS
FTIDPDSGEIRVKAVLDREQRERYEFLVVAADKGSPSLKGTASVAINVMDRNDNDPKFML
SGYNFSVMENMPPLSPVGMVTVIDADKGENARIQLSVEQDNGDFVIQNGTGTILSSISFD
REQQSTYTFRLKAVDGGDPPRSAYVGVTINVLDENDNAPFITSPSNATYKHILPHTSPGQ
QVSKVKAEDIDSGVNAELTYSITGGNPFELFQISPHSGDITLEKEILRKHHGLHRLVVRV
NDKGKPSRHGTALVHFYVNETLANRTLLDTLVGHSLDTPLDIDIAGDPEYERSKQRSNIL
FGVIAGIVAVTLVIVLVVLVRYCRQREAKSGYQAGKKETKDLYAPKQASKSGKSKNKVKK
SKSPKPPKPTEDEEETGLQKSLKFNLMNDSVSDSPRIHLPLNYPPGSPDLGRHYRSNSPL
PSIQLQPQSPSASKKHQVVQDLPATNTFVGTGDNNSTGSEQYSDYSYRTNPQKYTNKQLP
HRRVTFSAASQAQDLQDPSQHSYYDSGLEESETPSSKSSSGPRIGPLALPEDHYERTTPD
GSIGEMEHPENDLRPLPDVAMTGTCTRECTEFGHSDTCWMPGQSSPSRRPKNALKLSTFV
PYQDRGSQEQVGNGSPRLSEERSTKMANLRLLPTYSAFSNSSHEPCKDSPMEEIPLTQTS
DFQPATTPSSQTTKREIYL
NT seq
3660 nt
NT seq
+upstream
nt +downstream
nt
atgcagacgccgctggatcagcgctccggggaccggccgcatccaactcccctgcggcgc
aggatgaggcccctcgcctcctgcctgggcctgtggctcctctgccagctgcctgccctg
gtctgcgggacgcgggtggtctacaaagtgcaggaggagcaaccccccaacacgctcatc
ggcagcctggcctctgactacggcttcccagacgtggggcacctctacaagctggaagtg
ggggccccgtacctgcgtgtggacggcaagactggggacatctacaccacggagacctcc
atcgaccgggagagcttgcgtgagtgccagcacctcctgcccggcgagccctgctacctg
gagttcgaggtgtccatcactgacctgatcatgaacagcagcccacgcctgctggagggg
cagatagaggtgctcgatatcaatgacaacacgcccaacttcgcctcgcctgttctcacc
ctgaccatccccgagaacaccaacatcggggctctcttctccatacccccggccatggac
cgcgactcgggtcccaacggcgttgcctcctacgagctgatggctggcccggaggcgcag
gagctctttgggctgcaggtggccgaggaccaggacgagaagcagccgcagctgatcgtc
atggggaacctggaccgggagcagtgggactcctatgacctgaccatcaaggtgcaggac
gggggcagcccgccgcgggcgagcagtgccctgctgcgcatcaccatcgtggacatgaat
gacaatgcgcccaagttcgagaaggccctctacgaggcagagctgtccgaaaacagcccc
gtggggcactctgtcctccaggtgaaggccaacgactcggaccagggcgctaacgccgag
atcgactactcgttccaccaggcctcagacatggtgcgccggctgctgcgcctcgaccgc
gccacggggctcatcaccgtccagggacccattgaccgcgaggacgtcagcatcctcaag
ttctccgtcatggccaaggacaagggggccaaccccaagagtgcccgcacccaggtggtg
gtcaccatcaaggacatgaacgacaacgcgccctccattgagattcggggcatcgggttg
gtcacgcaccaggatggcatggcaaatatctcggaggacgtgccagtagagacagcagta
gctctggtgcaggtgtccgaccgagatgagggcgagaacgccgtggtgacatgcgtggtg
gctggtgatgtcccattccagctgcggcaggcaagtgaaactgggagcgacagcaagaag
aaatacttcctgcagaccaccacgccgctggactacgagtcggtgaaggactacacgatt
gagatcgttgcggtggactcggggaacccgcccctctccagcaccaactcgctgaaggtg
caggtggtggacgtgaatgacaacgcgcctgtcttcagccagagcttcaccgaggtggcc
ttccccgagaacaacgagcccgatgacctggtgatggaggtaagcgccagcgatgcggac
agcggctccaacgccaagctggtttactcgctggtgacagacccctcgtccaagggctcc
ttcactattgaccccgactctggggagatccgagtgaaggcggtgctggaccgcgagcag
cgggagcgctacgagttcttggtggtggcggcagacaagggcagccccagcctcaagggc
acagcatctgtggccatcaacgtcatggacaggaatgacaacgaccccaagttcatgctg
agcggctacaacttctcggtgatggagaacatgccgcccctcagccctgtgggcatggtg
acggtgatagatgctgacaaaggagaaaacgcccgcatccagctgtcggtggagcaagac
aatggggattttgtcatccagaatggcactggcaccatcctctccagcatctcttttgac
cgggagcagcagagtacgtacactttccggctcaaggcggtggacggtggggatcctccc
aggtctgcatacgtgggggtgaccatcaatgtcttggatgagaatgacaatgcccccttc
atcacttcgccctccaatgccacctacaagcacatcctgccccacacgagccctggccag
caggtgagcaaggtcaaggcagaagacattgactccggcgtcaacgcggagctgacctac
agcatcacgggaggcaaccccttcgagctcttccagatctccccgcacagcggagacatc
acgctggagaaggagatcctgcgcaagcaccacggcctgcaccgcttggttgtgcgcgtc
aacgacaagggcaagccctcgaggcacggcacagcactggtgcacttctacgtcaatgag
acgctggccaaccgcacgctgctggacacgctggtggggcacagcctggacacgccgctc
gacatagacatcgctggagaccccgaatacgagcgcagcaaacagcgaagcaatatcctc
tttggagtcatcgctggcatcgtggcagtcaccttggtcatagtgctggtcgtgctggtg
cgctactgccgacagcgggaggccaagagtggctaccaggcaggcaagaaggagaccaag
gacctgtacgcacccaagcaggccagcaagagcggtaagagcaagaacaaggtgaagaag
agcaagtccccaaagccgcccaagcccacggaggacgaggaggagacggggctgcagaaa
tcgctcaagttcaacctcatgaatgactccgtcagcgacagccctcgcatccacctgccc
ctcaactacccaccgggcagcccagacctggggcgccactaccgctccaactcacccctg
ccctccatccagctgcagcctcagtcgccctctgcctccaagaagcaccaggtggtgcag
gacctgccggccaccaacacctttgttggcacaggggacaacaactcgacgggctccgag
cagtactcggactacagctaccgcaccaacccccagaaatacaccaacaagcagttacct
catcgccgagtgacgttctctgcggccagccaggcccaggacctgcaggacccctcccag
cacagctactatgacagcgggctggaggagtcggagaccccgagcagcaaatcatcgtcg
ggaccccgcatcgggccgctggccctgcccgaggaccactatgagcgcaccacgcccgac
ggcagcatcggggagatggagcaccccgagaacgatctccggcctctgcccgatgtagcc
atgactgggacctgtacccgggagtgcacagagttcggccactccgacacctgctggatg
cccggccaatcctcccccagccgcaggcccaagaacgccctcaaactctccacttttgtg
ccttaccaagacagagggagtcaagagcaagtcgggaatggcagccccagactctcagaa
gagcgcagcaccaaaatggccaacctccgcctgctccccacgtacagtgccttctccaat
agtagccatgagccctgcaaggactctcccatggaggaaattcctctcacccagacctcg
gacttccagccagccaccaccccctcgtcccagaccaccaagagggagatatacctgtga
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