Anser cygnoides (swan goose): 106035590
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Entry
106035590 CDS
T04896
Symbol
MTREX
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
acyg
Anser cygnoides (swan goose)
Pathway
acyg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
acyg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
106035590 (MTREX)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acyg03019
]
106035590 (MTREX)
03041 Spliceosome [BR:
acyg03041
]
106035590 (MTREX)
03009 Ribosome biogenesis [BR:
acyg03009
]
106035590 (MTREX)
03016 Transfer RNA biogenesis [BR:
acyg03016
]
106035590 (MTREX)
Enzymes [BR:
acyg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
106035590 (MTREX)
Messenger RNA biogenesis [BR:
acyg03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
106035590 (MTREX)
Spliceosome [BR:
acyg03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
106035590 (MTREX)
Complex C
U4/U6.U5 tri-SnRNP related factors
106035590 (MTREX)
Ribosome biogenesis [BR:
acyg03009
]
Eukaryotic type
Pre-60S particles
Helicases
106035590 (MTREX)
Transfer RNA biogenesis [BR:
acyg03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
106035590 (MTREX)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
106035590
NCBI-ProteinID:
XP_066845016
LinkDB
All DBs
Position
Z:72251442..72298406
Genome browser
AA seq
1080 aa
AA seq
DB search
MGRAPSAVLLVAAAHGAPCPQRIRNRPRPGGRQEGKGTGAGRGGAERSGGKMADAFGDEL
FSVFEAEPAAAKSKAAAAEAARRTGKRSEEAPSGAAPGKAKREAEVNSTEDAVSGKKPKL
EDVVSEDTNLADLMPHVKVQAVETVEGCTHEVALPADEEFTGLKPRTGKPAKEYPFSLDA
FQREAILCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIFTSPIKALSNQKYREM
YEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDSER
GVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHVIYTDYRPTPLQHYIFP
AGGDGLRLVVDENGDFREDNFNTAMQVLRDAGDLAKGDQKGRKGGTKGPSNVFKIVKMIM
ERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMVEEVFNNAIDCLSDEDKKLPQVE
HVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFAMGINMPARTVLFTSAC
KFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVDEKMSPTIGKQLLKGSADPLNSA
FHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAIPGVVEKVNKLEEQYNKIAIPNEEN
VVIYYKIRQQLAKLGREIEEYIHKPKYCLPFLQPGRLVKVKNEDDDFGWGVVVNFSKKSN
VKPNSGELDPLYVVEVLLHCSKESLKNSATEAAKPAKPDEKGEMQVVPVLVHLLSAISSV
RLYIPKDLRPIDNRQSVLKSIQEVQKRFPDGVPLLDPIDDMGIKDQGLKKVIQKVEAFEH
RMYSHPLHNDPNLETVYKLCERKAQIAMDIKAAKRELKKARTVLQMDELKCRKRVLRRLG
FATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDLSAEQATALLSCFVFQENSSEMP
KLTEQLAGPLRQMQECAKRIAKVSAEAKLEIDEENYLNSFRPNLMDVVYTWANGASFAHI
CKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENKFAEGITKIKRDIVFAASLYL
NT seq
3243 nt
NT seq
+upstream
nt +downstream
nt
atgggccgagcccccagcgcggtgcttcttgttgcggccgcccatggcgctccgtgcccg
cagcggatccggaaccggccgaggcccgggggcaggcaggaagggaaagggacgggcgcg
gggcggggcggagcggagcggagcggggggaagatggcggacgcgttcggggacgagctc
ttcagcgtgttcgaggcggagccggccgccgccaagagcaaggcggccgccgccgaggcc
gccaggaggacgggaaagcgatcggaggaggcgccgtcaggggctgcgccagggaaggcc
aaaagggaagccgaggtcaatagtacagaagatgcggtttcaggaaagaaaccaaaattg
gaagacgttgtatcagaagacacaaatctggcagacctgatgccacacgtaaaggtgcaa
gctgtggaaactgttgaaggttgcacacatgaggttgcacttccagcagatgaagagttc
acaggtctaaagccaagaactggaaaacctgcaaaagaatatccatttagtcttgatgcc
tttcagagggaagcgattctttgtgtagataataaccagtctgtgttagtgtcagctcat
acatcagctggtaaaactgtatgtgcagagtatgcaattgccttggctttgagggagaaa
cagcgtgtgatatttacgagtccaattaaagctctgagtaatcagaagtaccgtgagatg
tatgaagagtttcaggatgttggtttgatgactggggatgtcaccattaatcctacagct
tcttgtctggtgatgacaacagagatcctgagaagtatgctctacagaggttctgaggtt
atgcgagaagttgcatgggttatttttgatgaaatccactacatgagagattcagaacgt
ggtgtagtttgggaagagacaattattttgctccctgacaatgttcattatgtgttcctt
tctgcaactattccaaatgctcgtcagtttgctgaatggatctgtcatcttcacaaacag
ccctgccatgtgatttacacagactatcgacctactccactgcagcactatatattccca
gcaggaggagatggattgcgtctcgtcgttgatgaaaatggagacttcagagaagataat
tttaacacagcaatgcaagtgcttagagatgcaggagacttagcgaaaggggaccagaaa
ggcaggaaaggaggaacaaaaggtccttcaaatgtttttaagattgtgaagatgatcatg
gaaaggaatttccaacctgtaattattttcagcttcagtaaaaaagattgtgaagcctat
gcacttcagatgacaaagttagatttcaatacagatgaagaaaaaaagatggttgaagaa
gtattcaataatgcgattgactgtttgtcagacgaagacaaaaagcttcctcaggttgag
cacgtacttcctcttctgaagcgtggaattggtatccatcatggcggtctgcttcctatc
ttgaaagaaaccatagaaattcttttctctgagggcctaataaaggccttatttgcaaca
gagacttttgctatgggaattaatatgccagccaggacagtgctgtttacgagtgcctgc
aagtttgatgggaaagatttccgatggatatcctcaggtgaatacattcaaatgtcaggt
cgtgcaggacgccgaggtatggatgacagaggaatagtaattctcatggtggatgaaaaa
atgagtccaacaattggcaaacagcttttgaagggttcagctgatcctctaaacagtgca
ttccacctcacatacaacatggtattgaatttgcttcgagtagaggaaattaaccctgaa
tatatgttagaaaaatcattctatcagttccaacattacagagctattccgggagtagta
gaaaaggtgaataaactggaagaacagtacaacaaaatagcaattcccaatgaagaaaat
gtggtcatatactacaaaatccgacagcaacttgcaaaactgggtagagagatagaagaa
tacattcacaaaccaaagtattgcttgccctttctgcagccaggaagactagtaaaggtg
aagaatgaagatgatgactttggatggggagtggttgttaacttctctaagaaatcaaat
gttaagcctaactctggagaattggacccattatatgtagttgaagtgctactgcactgc
agcaaggagagtttgaaaaattctgctactgaggctgcaaagccagccaaacccgatgag
aaaggagagatgcaggttgttccagttttggtacatcttctctcagctatcagcagtgtt
cgactttacataccaaaagacttgaggcctattgacaacaggcaaagtgtgttaaaatct
atacaagaagtacagaagagatttcccgatggagtaccattactagaccctatcgatgac
atgggcatcaaagatcaaggactgaaaaaagtcatccagaaagtagaggcatttgagcat
aggatgtattcacatcctcttcacaatgatcccaatttggaaactgtatacaaactttgt
gaaagaaaagcacagattgctatggatatcaaagcagcaaagcgagaactgaaaaaagcc
agaacagtcctacaaatggatgaactcaaatgccgcaagcgtgttttgagaaggctgggg
tttgccacgtcttcagatgttattgagatgaaaggacgggttgcttgtgaaatcagcagt
gctgatgaacttcttctgacagaaatgatgttcaatggtctcttcaatgacttatccgca
gaacaggcaactgcactgctaagctgttttgtgtttcaagagaactccagtgaaatgcca
aaactgacagagcagttggcaggaccacttcggcaaatgcaggagtgtgctaagagaatt
gccaaggtatcagcagaagcaaaactggaaattgatgaagaaaattacttaaattctttc
agacccaacctcatggacgttgtgtatacatgggcaaatggagctagctttgctcacatt
tgcaagatgactgatgtctttgaaggtagcataattcgttgtatgagaaggctggaggaa
ctgctccgacagatgtgccaggctgcaaaagctattggaaacacagagctggaaaacaag
tttgcagagggtattacaaaaatcaagagagatattgtttttgctgcaagcctttacctg
taa
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