Anser cygnoides (swan goose): 106040849
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Entry
106040849 CDS
T04896
Symbol
COL20A1
Name
(RefSeq) collagen alpha-1(XX) chain isoform X1
KO
K24357
collagen type XX alpha
Organism
acyg
Anser cygnoides (swan goose)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
fn3
VWA
Collagen
Pur_ac_phosph_N
Ig_DSCAM-DSCAML_C
VWA_2
FN3_Tor_3rd
DUF4998
CBM_4_9
Motif
Other DBs
NCBI-GeneID:
106040849
NCBI-ProteinID:
XP_047930697
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All DBs
Position
16:complement(2541068..2586125)
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AA seq
1472 aa
AA seq
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MLIRTCFLFACLPVASHVWGRGGQGSGRLKLSVLSEDRLQMKWKETEGNINGYKVRVKPM
AGDSEQEVMLKTKTPKATVGGLSPTKEYTLQVYVLNGSQEALFAKRKFVIEDLKNASQTR
NNRRNAGAASGKNLTSAGSSAAEHSGGAEPTPPPPNAVLVQPAKDRAERKRQKGTQPKGS
GEATRSQPHAEAAVTQTPQPAPKSSQRAPANSERESLGKEKPTKDSLRRGSQFQCDTSAM
TDIVLLVDGSWSIGRSNFKLIKEFLSTLISPFSIAQDKIRVGLSQYSSDPRTEWDLGAYT
TRDQVLEAVRNLRYKGGNTFTGLALTHVLEQNLKPDAGARLEAEKLVILLTDGKSQDDAN
LAAQTLKNMGIEIFAIGVKNADEAELKQVASEPLELTVYNVLDFPLLSNLVSRLTRVLCA
RIKEKSKESAGSTVKDIPTDMGPQLSPTDLKISAVTSKSMHLTWSPPLRPPKKYRIVYYP
SKGGTPKEVILDGAVSSLRLSNLTSHTEYLVSVFPIYDTAVGHGLRGVTFTLPLSSPRSL
RVSELSHNSMRLSWKAAPGATQYLVLCSAAPDGAEDYTVEVKVAQPEVLLGGLSPSTEYS
VAVYAMYGEDASDPASIQETTLPLSPPRYLSFSELSHASVRVSWEAASRAVKAHHVTYEA
SGGSNTGEVEVPGTATSTVLRPLSSLTQYFISVRSTYDEGDSFPITGNITTLKVPPPRAL
KVTELSGNSLRLQWEAVAASDVVVYQIKWSTAGGEKPQELSIAGNVATAILPGLQKNTDY
KISIWAYYKDGARSDTVSVQHRTNSRSPPTNLFIDSESPTSLQVHWKPPEGRVQHYKITY
SPVSDTSAQQTIMASGKSSSVTLQSLLPDRAYKVIVSAVHYTGESESTSATGRTAPVMSK
LPSIRGFVPSKTEACPTISSAAGSIRGFDMMEVFGLVEKEYSSVKGVAMEPFVFSGSRTF
TLFRDTQLTQRTSDIHLFAIPPEHTISFLLRLLPETPKEPFAVWQITDEDFQPLLGVNLD
PSKKSLTYFNHDYKADLQEVSFDQQEVKKIFYGSFHKVHVAVSRFKIKLYLDCKKIAEKP
INTVGSISTAGFIMLGKVTRTRGPRSGSASFQLQSLQIVCNSLGAEEDRCCDLPALRDEE
TCPTLAPACSCTSGRPGLPGPPGPPGSPGKRGPQGEQGEPGPKGEPGPPGQVGPAGPSGQ
QGSPGSQGITIQGPVGPPGIKGEKGDTGSPGVQGIPGVQGAPGRDGLQGAKGVRGLEGTA
GPPGPPGPRGFQGVTGSRGSSGEKGPPGDVGPTGLPGPKGERGEKGEPQSLATIYQLVSQ
ACERMIQTHVLKFDSFIHEHARKPVPVWEERLKPGEPGPPGPPGPPGSNGERGENGIPGQ
PGKDGYPGERGAPGPKGEKGMSGVNKEGIQGPRGRTGPPGEVVLGKPGPKGYPGNTGPQG
FPGVRGQPGQSGYPGGCDISGCYGAGRRDFIP
NT seq
4419 nt
NT seq
+upstream
nt +downstream
nt
atgctgattcgcacttgtttcctttttgcctgcctgcccgtggcgagccacgtctgggga
cgagggggccaagggtcaggccgcctgaaactctcggtcctctcggaagacaggctccag
atgaaatggaaagaaaccgaagggaatatcaacggctacaaagtgcgggtgaaacccatg
gcaggggactcagagcaagaagtcatgctgaaaaccaagactcccaaagccaccgtgggg
gggctgagccctaccaaggaatacacgctgcaggtctacgtgctcaacggctcccaggaa
gccttgtttgccaagaggaagttcgtgatagaggacctcaaaaatgcatcccagactaga
aacaaccgaaggaacgcgggagctgcgtcgggaaagaatctcacctccgcggggagctca
gcagctgagcacagcgggggtgcagagcccaccccaccgcccccgaatgctgtcttggtg
cagccagcaaaggacagagccgaaaggaaaaggcagaaggggactcaacccaagggctca
ggagaagccacgagaagccagccccatgcggaggccgctgtgacacaaacaccacagcca
gccccaaaatcatcccagcgcgctcccgcaaactcggagcgagagtctctaggaaaagaa
aaacccacaaaggattcactgaggagaggttcccagtttcagtgtgacacatctgcaatg
actgatattgtcctgctcgtggatggatcttggagcatcggacgcagcaacttcaagctc
attaaagagttcctgagcactttaatttccccattcagcattgcccaagacaagataaga
gtagggctgtcccagtacagcagcgacccccgcacggagtgggacctgggtgcttacacc
acgagggaccaggtgctggaggcagtgaggaatttgcggtacaagggtggcaacaccttt
acaggcctggcgctgacccacgtcctggaacaaaacctgaaaccagatgctggtgcccgg
ctggaggctgagaaattggtaatcctcctgactgacggaaaatcccaggatgatgccaac
ctggctgctcagaccttgaaaaacatgggcatagagatatttgccatcggggtgaagaac
gcggacgaggccgagctgaagcaggtggcctcggagccgctggagctcacggtgtacaac
gtgctggatttccccctgctcagcaacctggtcagcaggctcacgcgggtcctgtgcgcc
aggatcaaggagaagagcaaggaaagcgcaggtagcactgtgaaagatatccccacagat
atgggtccccagctgagcccaactgaccttaaaatatcagctgtgacctctaagagcatg
cacttgacctggagtcctcctctgagaccaccaaagaaataccggattgtgtattaccca
tcgaagggtggcacccccaaggaggtgattttagatggagcagtctcctctctgaggctt
tccaacctgacctcgcacacggagtatctggtgtcggtgtttcctatttatgacaccgct
gttgggcatgggctgagaggcgtcaccttcacactgcctctgtcttccccccgctccctg
cgcgtctctgagctgagccacaacagtatgaggctgagctggaaggcagccccaggagcc
acgcagtacctggtgctctgctctgcagcccctgatggagcagaggactatacggtggag
gtgaaggtggcccagcctgaggtcctgctgggtgggctgtcgcccagcacggagtactct
gttgccgtgtatgcgatgtacggggaagatgcaagcgatcctgccagcatccaggaaacc
accttgcccttgagtcccccccggtacctgagcttctccgagctcagccatgcgtccgtc
cgcgtcagctgggaggccgcgtctcgggcggtgaaggcccaccacgtcacctacgaggcg
agcggagggagcaacaccggggaggtcgaggttcctggcactgcaacatccacggtcctg
aggcctttgtcctcccttacccagtacttcatcagtgtcaggtccacgtatgatgaaggc
gactcctttccgattaccggcaacattaccaccttaaaggtccccccgccgcgggccctg
aaggtgaccgagctctctgggaacagcctccggctgcagtgggaagccgtcgctgcctcc
gacgtggttgtctatcagatcaaatggagcacagccggtggggagaagcctcaggagctc
tccatcgctggaaatgtggcaactgccatcctgccaggcttgcagaagaacacagactac
aaaatatccatctgggcctactacaaagatggtgctcgaagtgacacggtttctgttcag
cacaggaccaattcccggagcccacccaccaacctcttcatcgactccgagagccccacc
agcctccaggtccattggaagccccccgagggccgcgtacagcactacaaaatcacctac
agccccgtttctgataccagcgctcagcaaacaatcatggcttctgggaaaagcagcagc
gtgaccttgcagtcgctgctgcctgaccgagcctacaaggtgatcgtttcggctgtccac
tacacgggagagagcgagagcacgtctgcaacgggtcggacagctcctgtgatgtctaaa
ctgccttcaatacgaggattcgtcccatctaaaacagaggcctgccccaccatcagctct
gctgcgggttccatacgagggtttgatatgatggaagtgtttggcttagtagagaaggaa
tattcctccgttaaaggcgtagccatggagccgttcgtattcagcggatcccgcaccttc
actctgttcagggacactcagctcacccagaggaccagcgacatccacctctttgcaatc
ccacctgagcacaccatcagcttcctcctgcgcctcctgcccgagacccccaaggagccc
tttgccgtgtggcaaataacagacgaggacttccagcccctcctcggtgttaaccttgac
cccagtaagaaatccttgacctatttcaaccatgactacaaggctgacttgcaggaagtc
tcctttgaccaacaggaagtgaagaagatattctatgggagctttcataaggtgcacgtg
gcagtgagccgcttcaagatcaaactctatctggactgtaagaaaatagcagagaaacct
atcaacaccgttggcagcatctccactgctggcttcatcatgctgggaaaagtgacaagg
accagagggcccaggagcgggtcagcatcgttccagctgcagtctttgcagattgtgtgc
aacagcttaggggcagaggaggacagatgctgtgatcttcctgcactgagggacgaggag
acctgcccgaccttagctcctgcctgctcttgcacttctggccgcccaggcttgccagga
cctccaggaccccctggcagccctgggaagagaggaccgcaaggggagcagggggagccg
gggcccaagggtgaaccaggcccacctggacaagtggggccagcgggccccagtggacag
caaggttcgccaggctcccaaggaatcacgattcagggtcctgtgggaccaccaggtata
aaaggagaaaaaggagacactggaagtcctggcgtgcagggcattcctggtgtgcaggga
gctccaggcagggatggtcttcaaggtgcaaagggagtgaggggactagaaggcaccgct
gggcctccgggacctcctggaccaaggggtttccaaggggtgacaggctcccgaggcagc
agtggcgagaagggacctccgggtgatgttgggccaacagggctgccaggtccaaaagga
gaaagaggagagaaaggggaaccacagtccttggccacaatttaccagctcgtcagccag
gcttgtgagcgaatgatccagactcatgtgttgaaatttgactcattcatccatgaacat
gcaaggaagccagttcctgtttgggaagaaagattaaagcctggagaaccaggaccacca
ggtcctccgggtccccctgggagcaatggagaaagaggagaaaatggcatccctggccag
ccaggaaaggatggatatcctggagaaagaggtgccccgggacctaagggagaaaaaggg
atgtctggagtcaacaaggaagggattcagggacccagaggcagaacaggcccaccagga
gaagttgtgctggggaaaccaggtccaaagggttaccctgggaacactggtcctcaaggt
tttcctggtgtcaggggacagcctggccagtcgggatatccagggggttgcgatatctct
ggatgttatggagcaggtagaagagatttcatcccctga
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