Anser cygnoides (swan goose): 106042940
Help
Entry
106042940 CDS
T04896
Symbol
VPS39
Name
(RefSeq) vam6/Vps39-like protein isoform X1
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
acyg
Anser cygnoides (swan goose)
Pathway
acyg04140
Autophagy - animal
acyg04148
Efferocytosis
acyg05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
acyg00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
106042940 (VPS39)
04148 Efferocytosis
106042940 (VPS39)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
106042940 (VPS39)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
acyg04131
]
106042940 (VPS39)
Membrane trafficking [BR:
acyg04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
106042940 (VPS39)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
TPR_Vps41
Clathrin
WD40_like
Lgl_C
SAM_CEP-1_C
Motif
Other DBs
NCBI-GeneID:
106042940
NCBI-ProteinID:
XP_047921138
LinkDB
All DBs
Position
5:32255087..32276878
Genome browser
AA seq
892 aa
AA seq
DB search
MHDAFEHVPILEKLPLQIDCLAAWEEWLLVGTKQGHLLLYRIKKDMGCNRFEVTLEKSNK
NFSKKIQQIHVVSQFKILVSLLVPALPTPACVDFCCLRPQNNIYVHDLLTFQQITTVSKA
KGASLFTCDLQHSDTGEEVLRMCVAVRKKLQLYFWKDREFHELQGDFSVPDVPKSMAWCE
NSICVGFKRDYYLIRVDGKGSIKELFPTGKQLEPLVAPVADGKVAVGQDDLTVVLNEEGI
CTQKCALNWTDIPIAMEHQPPYIIAVLPRYVEIRTFEPRLLVQSIELQRPRFITSGGTNI
IYVASNHFVWRLIPVSIATQIQQLLQDKQFELALQLAEMKDDSDSEKRQQIHHIKNLFAF
NLFCQKRFDESMQVFAKLGTDPTHVMGLYPDLLPTDYRKQLQYPNPLPGLSGAELEKAHL
ALIDYLTQKRSQLVKKLNDSDHQSSTSPLMEGTPTIKSKKKLLQIIDTTLLKCYLHTNVA
LVAPLLRLENNHCHIEESEHVLKKAHKYSELIILYEKKGLHEKALQVLVDQSKKANSPLK
GHERTVQYLQHLGTENLHLVFSYSVWVLRDFPEDGLKIFTEDLPEVEALPRDKVLSFLIE
NFKSLAIPYLEHIIHVWEEIGADFHNCLIQLYCEKVQGLMKEYLNSLPADKTPVPAGEEG
GDLGDYRKKLLLFLEKSSCYEPSRLISDFPFDGLLEERALLLGRMGKHEQALFIYVHILK
DTKMAEDYCHKHYDRNKDGNKDVYLSLLRMYLSPPSVHCLGPIKMEVLEPQANLQAALQV
LELHHSKLDTTKAINLLPANTQISEIRIFLEKVLEENAQKKRFNQVLKNLLHAEFLRVQE
ERILHQQVKCIITEEKVCTVCKKKIGNSAFARYPNAIVVHYFCSKEVNTLDT
NT seq
2679 nt
NT seq
+upstream
nt +downstream
nt
atgcacgacgccttcgagcatgtgccgatcctggagaagctgccgctgcagatcgactgc
ctggcggcctgggaggagtggctccttgttggtaccaaacaagggcatcttcttctttac
aggatcaagaaagacatgggttgcaatagatttgaagtgacactagagaaatccaacaag
aacttctcaaaaaagattcagcagattcatgttgtttctcagtttaaaattctggtcagt
ctgttagtcccggctcttccgactccagcatgcgtagatttctgctgcctgcgtcctcaa
aataacatttatgtccacgacctgttgacatttcaacaaatcactacagtttccaaggca
aaaggtgcgtctctcttcacttgtgatcttcagcattcagatacaggggaagaggtgctg
agaatgtgtgtggcagtgaggaagaagttacaactttatttttggaaggacagagagttc
catgaactacagggggacttcagtgtacctgatgtacccaagtctatggcctggtgtgaa
aactcaatctgcgtaggtttcaagagggactattatctgatacgggtggatggaaaagga
tccatcaaagaactgtttccaacagggaagcagttggaaccactggttgcccctgtagca
gatggaaaagttgcagtcggccaagatgatctaactgttgtgctcaatgaagaagggatc
tgtacccagaaatgtgccttgaattggacagatattcctatagccatggagcaccagcct
ccctacattattgctgttctgccaaggtatgtggagatccgcacatttgaaccccgactg
ctggtacagagtattgagttacagagaccacgcttcatcacctctggagggacaaatatt
atatacgtggcaagtaatcactttgtttggcgactcatcccagtgtccatagccacacag
atccagcaacttcttcaggataaacaatttgaattggctttgcagttggcagaaatgaaa
gatgattcagatagtgagaagcgacaacaaatacaccacatcaagaacctctttgccttc
aacctcttctgtcagaagcgctttgatgaatccatgcaagtttttgccaaacttggtaca
gatcccactcatgtgatgggtctgtatcctgacctcctgcccacagattacaggaaacag
ctacagtatcccaaccccctgccagggctctctggggcagagttggagaaggcacattta
gctctgatagactacctaactcaaaaaagaagtcaactggtaaagaagctaaatgattct
gaccatcaatccagtacttcgccccttatggaaggaacaccaacaatcaaatccaaaaag
aagctgctacaaatcattgataccacactattgaagtgttacctccatacaaatgtagca
cttgtggcaccattgctacgtctggagaacaatcactgccatattgaggagagtgagcat
gtactaaagaaggcacacaaatacagtgagctgataatactgtatgagaagaaaggtctg
catgagaaagcattacaggtactggtggatcagtcaaagaaagccaactcacctttgaag
ggtcatgagaggacagtgcaatatctgcagcatttgggcacagagaacttgcatttagta
ttttcttactctgtctgggtgctaagagattttcctgaagatggactgaagatatttaca
gaagacctccctgaagtggaagctttgccacgagataaagtgctcagtttcttgatagaa
aactttaaaagtttggctattccttatctggaacacatcattcatgtctgggaagaaatt
ggtgcagactttcacaactgtctgatccagctgtactgtgagaaagtgcagggcttaatg
aaagaatatctcaactctttacctgcagataaaactccagtgcctgctggggaggaagga
ggagacttgggggattaccggaaaaaacttcttctttttttggagaagtctagctgttac
gaacctagtcgactaattagtgactttccctttgatggtcttctagaagaacgtgctctg
ctcttgggtcgtatggggaagcacgagcaagctctgtttatttatgttcatattttgaag
gacaccaagatggctgaagactactgccataaacattacgacagaaacaaagacggcaac
aaagatgtctatctatcccttctccggatgtatctctccccgcctagtgttcattgctta
gggccaatcaagatggaagtgctggagcctcaagccaatctgcaggctgctctgcaggtg
ttggagctgcatcacagcaaactggataccaccaaggcaataaaccttctacccgcaaat
acacagattagtgagattcgaattttcctagagaaagtcctcgaagaaaatgcccaaaag
aagagattcaatcaagtactcaagaatcttctccatgctgaatttctgagggtccaggag
gagcgaattttgcatcagcaagtgaagtgcataattacagaggagaaggtgtgcactgta
tgtaaaaagaagataggcaacagtgcatttgcgcgataccctaatgcaatagttgtgcat
tatttctgctccaaagaagtcaacacattggacacctga
DBGET
integrated database retrieval system
