Anser cygnoides (swan goose): 106045981
Help
Entry
106045981 CDS
T04896
Symbol
DDX42
Name
(RefSeq) ATP-dependent RNA helicase DDX42 isoform X1
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
acyg
Anser cygnoides (swan goose)
Pathway
acyg03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
acyg00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106045981 (DDX42)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
acyg03041
]
106045981 (DDX42)
Enzymes [BR:
acyg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
106045981 (DDX42)
Spliceosome [BR:
acyg03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
106045981 (DDX42)
Complex B
106045981 (DDX42)
Complex C
U2 SnRNP specific factors
106045981 (DDX42)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
P-loop_SecA
ERCC3_RAD25_C
DUF460
Motif
Other DBs
NCBI-GeneID:
106045981
NCBI-ProteinID:
XP_013052242
LinkDB
All DBs
Position
22:5681558..5698336
Genome browser
AA seq
942 aa
AA seq
DB search
MNWNKGGPGTKRGFGFGGFAITPGKKEEPKLSQQSHSAFGTAGSSAAFAKSGPPQLPSFY
KIGSKRANFDEENAYFEDEEEDNSNVDLPYIPAENSPTRQQFHSKSADSDSDDDPLEAFM
AEVEDQAARDMKRLEDKDKEKKNAKGIRDDIEEEDDQEAYFRYMAENPTAGVVQEEEEDN
LEYDSDGNPIAPSKKIIDPLPPIDHSEIEYPPFEKNFYDEHEEITSLTPQQVVELRHKLN
LRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTG
SGKTAAFIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHSECKRFGKAYNLRSVAV
YGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVTYLVFDEADRMFDMGFEYQ
VRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEIFPS
GPSKWNWLTRRLVEFTSSGSVLLFVTKKANAEELANNLKQEDHNLGLLHGDMDQSERNKV
ISEFKKKGIPILVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYT
LLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQNPWFRKSRFKGGKGKKLNIGGGGLGY
RERPGLGSESSDRGNNNSVMSNYEAYKPSSGAMGDRLTAMKAAFQSQYKSHFVAASLNNQ
KTGSSAAGASGWTSAGSLNSVPTSSAQQNSANPDSPIAAAAAAKGVPGFTSTGNLSSVPT
FPSVGVQGYNNTTTASTNNREGVGSTSTGVAPGGGGGGGGIVRERYNDNRNSRHNEVPRR
GEGGGGRYNDVQRHGEGGGRHSDAYRHGEGRHSDNHRHGESRHFADVSSGNRNNGESRNI
SEGRNNENRNGENRKDANSRDNKTDGFAVPEPPKRKKSRWDS
NT seq
2829 nt
NT seq
+upstream
nt +downstream
nt
atgaattggaataaaggtggacctggtacaaagagaggctttggttttggtggatttgcc
ataacccctggaaagaaagaggagcctaagctttctcaacagtctcatagtgcttttgga
acagccggttcttctgctgcatttgcaaaatcgggacctccacagctgccttctttctac
aaaattgggtcaaagcgagcaaattttgatgaagagaacgcgtactttgaggacgaagag
gaagataacagcaatgtcgacttgccatacattccagcggagaattcccccactcgccag
cagtttcattccaaatcggcagactctgacagcgacgatgatcctctggaggcattcatg
gctgaagtggaggatcaagctgctcgagacatgaagcgacttgaagataaagacaaggaa
aaaaagaatgctaagggtattcgagatgacattgaagaggaagatgaccaagaagcttat
tttcgctacatggctgaaaaccctactgctggtgtggtacaagaggaggaagaggataac
ctcgagtatgacagtgatgggaacccaattgcaccgtccaaaaaaatcattgatcccctt
ccacctattgaccattcagagattgaatatccaccttttgagaaaaatttctatgatgag
catgaggagatcaccagtctcaccccgcagcaagtggtggagttacgtcataagctaaat
ctccgggtctccggtgctgctcctccaagacctggcagtagctttgctcattttggattt
gatgagcaacttatgcatcaaattaggaaatctgagtatacccagcccactcctatacag
tgccagggcgttccagttgcactaagtggcagagatatgattgggatagctaagactgga
agtggaaaaacagcagccttcatctggccgatgttgattcacatcatggatcaaaaggag
cttgaaccaggggacggtcccattgcagtgattgtatgcccaaccagagagctttgccaa
cagatccattctgaatgtaagcgctttggtaaggcgtataatctgcgctccgtagctgtg
tatggaggaggaagcatgtgggaacaagccaaagccctccaggagggggcagagatagtt
gtttgtacaccgggtcgtttgattgaccatgtgaaaaagaaagctacaaaccttcaaaga
gtcacttaccttgtgtttgatgaagcagacagaatgtttgatatgggttttgaatatcag
gtcagatcaattgcaagccacgtacgtcctgacagacagaccctcttgttcagtgccact
ttccgtaaaaagattgagaaattggcccgagatattctgattgacccaattcgagttgtg
cagggagacattggagaggcaaatgaagatgttactcaaattgtggagattttcccttct
ggccctagcaaatggaactggctgactcgacgccttgtggagtttacatcttctgggagc
gttctcctgttcgtcaccaagaaggcaaatgcagaagagctggctaataacctcaagcag
gaggatcataatttagggctgcttcatggtgacatggaccagagtgagaggaataaagtc
atttcagaatttaagaaaaaagggatcccgatactggtagctactgatgtagcagctcgt
gggttagatattccttccattaagactgtgatcaattacgatgtggctcgggacatagac
acgcacacccacagaattggtcgcactggcagagcaggcgagaagggagttgcctacact
ctgttgactcccaaagacagtaatttcgcgggtgatctcgtccgaaatctggaaggtgct
aatcaacatgtttccaaagagctgctggatctagcaatgcagaacccatggttccggaaa
tcccgtttcaaaggaggaaaaggcaagaagctgaatattggtggtggtggcttaggatat
cgtgagcgtcctggtctgggatcagaaagttctgaccgtggaaacaacaacagtgtgatg
agcaactatgaagcgtataagccatcctctggggcaatgggcgacagacttacagcaatg
aaagcagcttttcagtctcagtataagagccactttgttgctgcaagcttaaataaccaa
aagactggaagctctgctgcgggtgctagtggctggactagtgctgggagcttgaactca
gtaccaacaagttcagcgcagcaaaattctgcaaatcctgacagcccgattgcagctgcc
gcagcagcaaagggtgttccaggtttcaccagcaccgggaatctgagcagcgttcccacc
ttcccaagcgtcggagtacagggctacaacaacaccacgactgccagcactaataatcga
gaaggcgtcggcagcaccagcaccggcgtcgctcctggtggtggtggcggcggcggtggc
atcgtcagagaacgatacaacgacaacaggaacagtcggcacaatgaggtcccgcgccgg
ggagagggcggtggcggtcgctacaacgacgtgcagcgccacggggaaggaggtggccgc
cacagtgacgcttaccggcacggagagggccggcacagcgacaaccatcgccacggtgaa
agccggcatttcgctgacgtgagcagtggcaatcgcaataatggtgagagcaggaatatc
agcgagggtaggaacaacgagaacaggaatggcgagaacaggaaggatgccaacagccgg
gacaacaagacagatggttttgctgtcccagagcccccaaaacgtaagaagagtcgatgg
gacagttaa
DBGET
integrated database retrieval system
