Anser cygnoides (swan goose): 106046544
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Entry
106046544 CDS
T04896
Symbol
YTHDC2
Name
(RefSeq) 3'-5' RNA helicase YTHDC2 isoform X1
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
acyg
Anser cygnoides (swan goose)
Brite
KEGG Orthology (KO) [BR:
acyg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
acyg03041
]
106046544 (YTHDC2)
Enzymes [BR:
acyg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
106046544 (YTHDC2)
Spliceosome [BR:
acyg03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
106046544 (YTHDC2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
OB_NTP_bind
Helicase_C
HA2_C
R3H
DEAD
HA2_N
AAA_19
Ank_2
nSTAND3
Ank
Ank_4
ATPase
AAA_22
PhoH
AAA_16
Sigma54_activat
AAA_29
Motif
Other DBs
NCBI-GeneID:
106046544
NCBI-ProteinID:
XP_013053077
UniProt:
A0A8B9DXA3
LinkDB
All DBs
Position
Z:complement(23458584..23490618)
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AA seq
1424 aa
AA seq
DB search
MSRPGGGASGFTRQPGGAQGGSAGRGRGRALKDIRVDEEVEIAVSMALERFRYGDEKEME
FPSSLTTTERAFVHRLCQSLGLISKSKGKGPNRYLTVRKKDGSEVSHAVMTCCLSPTTKH
AIQRLIQRFPVTNKERTELLPKTERGNAFTVEAENKEVNKTSGRLNSGIPQVPVKRGESE
FDSFRQSLPVFEKQEEIVKIIKENTVVLILGETGSGKTTQIPQFLLDDCYKNGIPCRIFC
TQPRRLAAIAVAERVAAERREKIGQTVGYQIRLESRVSPKTLLTFCTNGILLRTLMTGDS
TLSTVTHVIVDEVHERDRFSDFLLIKLRDVLQKQSNLKLIISSAALDANLFIRYFGSCPV
IHIQGRPFEVKEMFLEDILRSTGYTNKEMVKYRKEKQREEKQQSTLTEWYSAQENSSKPE
SQRRRSVPNLSEEYNMMDDGGDTVFNQQTEKDANCLEPWLIKEMDSCLSDIWLHKDIDSF
AQVFHLILTENISVDYRHSETSATALMIASGRGFLSQVEQLISMGASIHCKSSNGWMALD
WAKHFGQTEVVDLLESYSASVEFGNLDESSLVQSSGNDLGAEDRELLKAYHHSFDDEKVD
LDLIMHLLYNICHSSDSGAILIFLPGYDEIVSLRDCILFDDKRFADNAHRYQVFMLHSNM
QTLDQKKVLRSPPSGIRKIILSTNIAETSITVNDVVFVIDSGKMKEKSFDALSCVTMLKT
VWISKASAIQRKGRAGRCRPGVCFRLFSRLRFQNMLEFQTPELLRMPLQELCLHTKLLAP
INCPVVDFLMKAPDPPPALIVRNAVQMLKTIDAMDTWEDLTELGYHLAELPVEPHLGKMV
LCAVVLKCLDPILTIACTLAYRDPFVLPTLASQKRAAMLCRKRLTAGTFSDHMALLRAFQ
AWQKARSDGWERAFCEKNFLSQATMEIIIGMRTQLLGQLRASGFVRARGGADIRDVNTNS
ENWAVVKAALVAGMYPNLVHADRESLVLTGPKEKKVRFHPTSVLSQTQYKKVPPANGQAA
AVQALPTDWLIYDEMTRAHRIANIRCCSVVTPVTVALFCGPARLPRNALQEPSSLRGDGV
SNGNSDSEVEDEATSTSALLKLDEWLHLKLDSEAAGLLLQLRQKWHSLFLRRMRAPSKPW
SQIDEIIIKAIITVLSTEEQSAGLQQPSGIGQRPRPMSSEELPLASTWRSTSSRKSSAET
ELSDDSSNAEKVLAKSMPPAFQPKKYKGKNTLHSKRTSDDRSDQSSARSTDSSSYPSPCA
SPSSTISGKGSKSPSPRSNMPVRYFIMKSNNLQNLDISQQKGVWSTRPSNERKLNRAFWE
SSMVYLIFSVQGSGHFQGFARMSSEIGSEKSQDWGSAGLGGVFKVEWIQKESIPFKFAHH
LLNPWNDNKKVQISRDGQELEPQVGEQLLQLWDRAPSAEKTQLS
NT seq
4275 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcggcccggcggcggcgctagcggcttcacccgtcagcccggcggcgcgcagggg
ggctcggcgggccgcggtcgcggccgggcgctgaaggatatccgcgtcgacgaggaggtg
gagatcgccgtgagcatggccctcgagcggttccgctacggggacgagaaggaaatggag
tttccttcttccctcactaccaccgagcgggcctttgtgcaccggctgtgtcagtccctt
ggtttgatatcgaagagtaaaggaaaaggaccaaatcgatacctgactgtaaggaagaaa
gatggatcagaagtatctcatgcagtaatgacttgttgtttgagtccaacgacaaaacat
gccattcagagattgattcagagatttcctgtcacaaataaagaacgaacagaacttctg
ccaaagactgagcgaggaaatgcatttactgtggaagctgaaaacaaagaagtcaacaag
acaagtggacggcttaacagtggtattcctcaggttccggtgaaaagaggggagtcagag
tttgattctttcaggcagtcactaccagtttttgaaaaacaggaggaaattgtcaaaata
atcaaggaaaatacagttgttctaattttgggagagactggatcaggaaaaactactcaa
attccacagttccttcttgatgactgttacaaaaatggaattccctgtcgtatattttgc
actcagccaaggcgtttggcagctattgctgtggctgaacgagtggcggcagaaagaaga
gaaaagattggccagactgttggttatcagatccgattagaaagcagggtttctccaaag
acactgttaacattttgcactaatggcatactacttcgcacactaatgacaggagacagt
actctgtcaacagtgacgcatgttattgtggatgaagtgcatgagagggatagattcagt
gacttcttgttaataaaactgagagatgtgttgcagaaacagagtaatttaaaactaatc
atttccagtgctgctctcgatgcaaatctctttattaggtattttggaagttgccccgta
atacacatacaaggaaggccttttgaagttaaagagatgtttttagaggacattttacga
agcactggatatacaaacaaagagatggtaaagtacagaaaggagaaacagcgagaagaa
aaacagcaaagtactcttactgagtggtattctgctcaagaaaatagtagcaagccagaa
tctcagagacgaagatctgttccaaatctatctgaagagtataatatgatggatgatggg
ggtgacacagtatttaatcaacagactgaaaaagatgcaaattgtcttgaaccatggcta
ataaaggaaatggattcttgtctttctgacatctggttgcataaagatattgattccttt
gctcaggtgttccatctcattttaactgaaaacattagtgttgattataggcacagtgaa
accagtgcaactgcactaatgattgcttcagggagaggcttcctgagtcaagtagaacaa
ctgatcagtatgggagcaagtatccactgcaaatcatccaacggctggatggctttggac
tgggctaagcattttgggcagacggaggttgttgacctgttggaatcctacagtgcatca
gtggaattcggaaatctggatgaaagttccctcgttcaatcaagtggtaatgaccttgga
gcagaggacagagaattgttgaaagcttatcatcacagttttgatgatgaaaaggtggat
ctggacctgattatgcacttactttataatatctgtcatagttctgatagcggagcaatt
ttaatatttcttcctggatatgatgagatagttagcttgagggactgtattctttttgat
gacaagagatttgctgacaatgctcacagatatcaagttttcatgcttcattcaaatatg
cagactttggatcagaagaaagtgcttagaagtccaccttctggtattcgcaaaataatt
ctttctactaatattgcagaaaccagcatcacagttaatgatgttgtatttgttattgac
tcaggcaagatgaaagagaaatcttttgatgcactgagttgtgttacaatgctaaaaact
gtgtggatttcaaaagctagtgccatccagagaaaaggcagggctgggcgctgtcggcct
ggagtctgcttccgtctcttcagcaggctcagatttcagaatatgttggaatttcagact
ccagaacttctacgaatgccacttcaggagctttgtttacacacaaaactgctggctcca
attaattgtccagttgttgactttcttatgaaagctcctgatcctccaccggctttaatt
gtgagaaatgctgtgcaaatgcttaagacaatagatgccatggatacttgggaagacctc
actgaacttggttatcatctcgctgaattaccagtagagccacaccttggtaaaatggtg
ttgtgtgctgttgttttgaagtgcctggatcccattcttactattgcttgtactcttgca
tatcgagacccttttgtcctacctacactggcctctcagaagcgtgcagccatgctgtgc
agaaaacgtttaactgcgggaacatttagtgaccatatggcattgctcagggctttccag
gcatggcagaaggcacggagtgatggctgggagagagccttctgtgaaaagaactttctt
tctcaagccaccatggaaatcatcataggaatgagaacacaactgcttggtcagcttaga
gcttcaggttttgtcagagcccgaggaggagctgatatcagagatgttaacactaactct
gaaaactgggctgtagttaaagctgccttggtagctgggatgtatcccaatctagtacat
gcggacagggaaagcctggttttgacaggaccaaaagagaagaaagtgcgttttcatcct
acctctgttcttagccagactcagtataaaaaggttccaccagcgaatgggcaagctgca
gctgttcaggcactccccacagactggcttatatatgatgaaatgacaagagctcacagg
atagcaaatatcagatgttgttcagttgtaacaccggtcactgtggcactcttctgtgga
ccagctaggttaccacgtaatgctttgcaggagccttcgtcccttcgaggggatggggta
tctaatggtaacagtgatagtgaggtggaggacgaagcaacttctacttcagcactactg
aagctagatgaatggcttcatctcaaactggactctgaggctgctggtttgctgttgcaa
ctcagacagaagtggcacagcttatttctgcgtcgtatgcgagctccttctaaaccgtgg
tctcaaattgatgaaataattataaaagcaatcataactgttttaagtactgaagaacag
tctgcaggtttgcagcagccttcaggaattggtcagaggccaaggcctatgtcttctgaa
gaacttcctttagcatctacatggaggtcaaccagcagtagaaaaagctcagcagaaact
gaattgtccgatgactcctctaatgctgaaaaagttttagcgaaatctatgcctccagca
ttccagccaaagaaatacaagggaaaaaacactttgcactccaaacgaacatcagatgac
aggtcagatcaatcatcagcgaggtctacggacagtagtagctatcccagcccatgtgct
agtccttcttcgacaatatctggaaagggttccaaatctccttcaccaagatcaaatatg
ccagttcggtacttcataatgaaaagtaacaacttgcaaaaccttgatatttctcagcag
aaaggtgtatggtctacaaggccaagcaatgaacgaaaactaaatagagctttctgggag
agcagcatggtttacttaatattttctgttcaaggatctggacactttcagggatttgcc
agaatgtcttctgagatagggagtgagaaaagtcaagactggggatctgctggtttagga
ggtgtatttaaggtggagtggatccaaaaagaaagcattccttttaagtttgcacaccat
ttgctcaacccttggaatgacaataagaaagtacaaataagcagagatggccaggaactg
gaaccacaagttggagagcagttgctacagctttgggatcgtgctccttcagcagaaaaa
actcaactgagttga
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