Anser cygnoides (swan goose): 106046856
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Entry
106046856 CDS
T04896
Symbol
BRIP1
Name
(RefSeq) Fanconi anemia group J protein isoform X3
KO
K15362
fanconi anemia group J protein [EC:
5.6.2.3
]
Organism
acyg
Anser cygnoides (swan goose)
Pathway
acyg03440
Homologous recombination
acyg03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
acyg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
106046856 (BRIP1)
03460 Fanconi anemia pathway
106046856 (BRIP1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
acyg03400
]
106046856 (BRIP1)
Enzymes [BR:
acyg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
106046856 (BRIP1)
DNA repair and recombination proteins [BR:
acyg03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
106046856 (BRIP1)
FA (Fanconi anemia) pathway
Downstream FA components
106046856 (BRIP1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD_2
Helicase_C_2
DEAD
ResIII
HBB
ARCH_RTEL1
DUF5543
Motif
Other DBs
NCBI-GeneID:
106046856
NCBI-ProteinID:
XP_013053523
LinkDB
All DBs
Position
18:10053612..10174051
Genome browser
AA seq
1272 aa
AA seq
DB search
MSSDVSEYTIGGVKIIFPCKAYPSQLAMMNAIVKGLNSRQHCLLESPTGSGKSLALLCSA
LSWQRSMYEKSLLKSSCEKEDKEPEALPLCRCTCHSQSESSEAATSVNHGASCSSNNYET
ESSIKTGSLQTNTGCMESNTLASKLSAKKRASLCESESDDFQVDRKRIRPLETEQQVRKR
HCFAKGVQLVDALEVYNQRKNGELIVHSEKSVKNLTFSPKPSVSSCTECSCSSGKETHKD
ASNTKKKDKGDQLFIPKIFFGTRTHKQISQITRELKRTAYSSVPMTILSSRDHTCIHPVV
SSSSTNRNELCVELLEGKHGKSCPYYHAVHKLSEHHALQSAHNLYQAWDIEDLVSLGKKL
RACAYFAARELMVGADIVFCPYNYLLDPQIRESMEINLKGQVVILDEAHNIEDCARESVS
FSVTESQLRAAREELDSMVNNNIRQKDHEHLRAVCYSLTNWLKESSSQLVERGYETSCKV
WSGKEMLNILHKMGITNITFPILQKHLSAILEKEEKISVFGREELIEIPVVSPATQIVLK
GLFMVLLCLFKDNSRYADDYRVALQQTYTWMNENQPDVSDSSAFFTNTKQKRKARHKTVV
HMLNFWCLNPAVAFSDLNDVRTIVLTSGTLSPMDSFSSELGVKFSIQLEANHVIRNSQVW
VGTIGAGPNGRKLCATFQHAETFEFQDEVGALLLAVCQTVGQGILCFLPSYKLLDKLKDR
WMHTGLWRNLELVKTVIAEPQGGAKSDFDELLKIYYDAIKCKGEKDGALLIAVCRGKVSE
GLDFCDENARAVVTIGIPFPNVKDLQVELKRKYNDQHKNSRGLLPGSQWYEIQAYRALNQ
ALGRCIRHRSDWGALILVDDRFRNNPNKYITGLSKWIRQQVRHHENFGSALESLQAFAKR
NQKGIDCLSPCSSEFLHVPSNSNVSSASQQEATIHLSPDVPVKSEEQNLVPDTHFTTPIN
SINPVTSNQSSNITAAMKQSGQKVDVESHSHNATQRRKHMDSTPKRPANKIERAKKNDWT
NSGFMKEHCCFKPLTSTPLPVAADCMSTASSKQKKNVNSASELIDGVNQCQSSFISEHKP
SVPESHLETTNFSVKNTEAPVAEEHLDELQLQIEPCSELPSVGGKSELSMLNASAEAEDE
DESIYFTPELYDDVESEEQEIRPLDPTCNANENLSECGTSAVASDLFVFNTSKTLTVTKE
MVNDDDRNTSLHGIMQNDGSKNSAVTVVKMASGTEAEQIESQEMDTKKRKISLSRSRNKG
VSSFLLDNTSTQ
NT seq
3819 nt
NT seq
+upstream
nt +downstream
nt
atgtcttctgatgtgtcagaatatactattgggggagtgaagattatattcccttgcaag
gcttacccttcacagcttgctatgatgaatgctatagttaagggcttaaatagcaggcaa
cactgtttgttggagagccccacaggaagcggcaaaagcttggcgttactttgttctgca
ttatcatggcagcggtctatgtatgagaaatcactgcttaaatcgtcatgtgaaaaggaa
gacaaagagccagaagccttaccactgtgtcgctgtacgtgtcattcccaatcggagagc
agtgaggctgctacaagtgtgaatcatggtgcttcttgttcttctaataattatgaaaca
gaaagttccataaaaactggaagcctgcaaacaaacacaggatgcatggaaagcaatacc
ctagcttcaaaattgtctgccaaaaaaagggcatctctatgtgaaagtgagagtgatgat
tttcaagtagacaggaagaggattcgtcctttagaaactgagcaacaggttagaaaacgg
cattgctttgcaaagggagtccagctagttgatgctttagaagtttataatcagagaaaa
aatggggagctgattgttcattctgaaaaaagtgtgaaaaaccttactttttctcccaaa
ccatctgtcagctcttgcactgagtgttcctgttcttctggaaaagaaactcataaagat
gctagcaacacaaagaagaaagacaaaggagatcagttgttcattcccaagatatttttt
ggaacacgaacacacaaacaaatatcccagattaccagagagttgaagagaacagcatat
tccagtgtccctatgacaattctttctagccgggatcatacctgtattcatccagtggtg
tctagtagtagtacgaacaggaatgaactgtgtgtagaattactggaaggaaaacatggc
aagtcctgtccttactatcatgctgttcataaactcagtgaacaccatgccctacagtcc
gcacataacctgtaccaagcttgggacattgaggatctagtcagcctgggaaagaagctt
cgcgcctgtgcatattttgcagccagagagctcatggtgggagcagatattgtattttgt
ccttataattatctcctagacccacagatacgggagagtatggaaattaacctaaaaggc
caagtggttattttagatgaagcccacaatattgaggactgtgctcgggagtcagtaagt
ttcagcgttacagaaagtcaactcagagctgctcgagaagagctagattccatggtcaat
aacaacattaggcagaaggatcatgagcatctacgggctgtgtgctactctttgacaaac
tggttaaaggagagctctagccaacttgtagaaagagggtatgaaacttcctgtaaggtt
tggagtggaaaagaaatgctgaacattttgcacaaaatgggaataaccaatattacattt
cccattttacagaaacacctttcagctatcttagaaaaagaagaaaaaatatcagtgttt
ggtagagaggagcttattgagataccggttgtgagccctgccacacagattgtgctaaaa
ggcttattcatggttcttttatgtctttttaaagataatagcaggtatgcggatgactac
agagttgctctacaacaaacgtatacttggatgaatgaaaaccagcctgatgtttcagat
tccagtgccttctttacaaataccaaacagaaaaggaaagcgcgtcataaaactgtagtc
cacatgcttaatttttggtgcttgaatcccgctgtggctttttcagacttaaatgatgtc
agaacaattgttctgacatctggtacgctctctccaatggattcattttcttcagaactt
ggcgtgaagttttctattcagctggaggcaaatcatgttattcggaactcgcaggtttgg
gttggcaccattggagcaggcccaaatggtcggaagctgtgcgccacattccaacatgca
gagacctttgagttccaagatgaggtgggagcgcttctgcttgcagtgtgtcaaacagtt
ggccaaggaattttgtgttttttgccatcctataagcttttggacaaattaaaagatcgc
tggatgcatactggcttatggagaaacctggagctggttaaaacagtcattgcagagcct
caaggaggagcaaagagtgactttgacgaattgctgaaaatatactatgatgcaatcaaa
tgtaaaggagaaaaagatggagcactccttatagctgtatgcagaggaaaagttagtgaa
ggcttggatttctgtgatgagaatgcccgagcagttgtaaccataggtattccgtttcca
aatgtgaaagaccttcaggttgaattaaagaggaagtacaatgaccagcacaaaaattcg
agaggccttttaccagggagtcaatggtatgaaattcaagcttacagggctctgaaccag
gccctgggaaggtgtatacgacataggagtgattggggtgctcttattctagttgatgac
cgcttccggaataaccctaacaagtacataactggattatctaaatggattcgccaacaa
gtccggcatcatgaaaattttggtagtgcacttgaatccttgcaagcatttgctaaaaga
aaccagaaaggcattgattgtttatcaccgtgtagtagtgaatttctccatgtaccttca
aattcaaacgtgtcatcagcttctcaacaggaggcaactattcacctgtcaccagatgtt
cctgttaaaagtgaggagcaaaatttggtcccagatactcattttactacacccatcaac
tcaattaatcctgtgacatcaaatcagtccagtaatatcacggcagcaatgaaacaaagt
ggccagaaagttgatgtagagagtcattctcacaatgcaacacaaagaagaaaacatatg
gactccacacccaaaaggcctgcaaataaaatagagagagcaaaaaagaatgattggact
aattctggttttatgaaagaacactgctgctttaaaccactgacttcaacgcctttgcct
gtagctgcagactgcatgtccacagcaagcagcaaacaaaagaagaatgtgaatagtgct
agtgaacttattgatggtgtaaatcaatgccagtcatcgttcatttcagaacataaacca
agtgtaccagaatcacatttggaaacaactaatttttcagttaaaaatactgaggctcca
gttgccgaggagcatcttgatgagctacagcttcaaattgagccctgcagtgagcttcct
tctgtgggagggaaatctgaactttcaatgttaaatgcatctgcagaagctgaggatgag
gatgagagcatctacttcacaccggaactctatgatgatgtagaatcagaggaacaggaa
atcagaccactagatccaacctgtaatgcaaatgagaatctgagtgaatgtggaacatcc
gcagtagctagtgatctttttgtattcaacacctcaaaaacactaactgtaacaaaagaa
atggttaatgatgatgacagaaacacaagtttacatggaataatgcaaaacgatgggagt
aagaatagtgcagttactgttgtaaagatggctagtggaactgaagcagagcagatagaa
tctcaagagatggacaccaaaaaacggaaaatcagtctttccagatcacgaaataaaggt
gtgtcatcctttttattggacaatactagcacacagtga
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