Anser cygnoides (swan goose): 106046887
Help
Entry
106046887 CDS
T04896
Symbol
PRPF40A
Name
(RefSeq) pre-mRNA-processing factor 40 homolog A isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
acyg
Anser cygnoides (swan goose)
Pathway
acyg03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
acyg00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106046887 (PRPF40A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
acyg03041
]
106046887 (PRPF40A)
Spliceosome [BR:
acyg03041
]
Complex A
U1 snRNP components
U1 related factors
106046887 (PRPF40A)
Complex B
106046887 (PRPF40A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
FF_PRPF40A
WW
WW_TCERG1
FF_RHG35_4th
WW_2
Motif
Other DBs
NCBI-GeneID:
106046887
NCBI-ProteinID:
XP_066855424
LinkDB
All DBs
Position
6:complement(40752573..40773989)
Genome browser
AA seq
1024 aa
AA seq
DB search
MSGGDSAAAAAAASPQPLPFSLPKPPPLMQLTPGDAVRPVAAAAADQSPKGSRLAGRPDW
PAGKPVSLLAPLLPPRGEPEPLMPFGPSSRQPLRGRLLGRCGGGSLLSPAMRPGAVDRGS
LMMGHPGMPHYPPMGMHPMGQRPPNMPPVPHGMMPQMMPPMGGPPMGQMPGMMQSVMPGM
MMSHMSQAAMQPTVPPGVNSMDAQVGVTPPGTQSSVLFRPQTTHPVVCAAQQTATTNSSV
NEEHSKQKSTWTEHKSPDGRTYYYNTETKQSTWEKPDDLKTPAEQLLSKCPWKEYKSDSG
KPYYYNSQTKESRWAKPKELEDLEAMIKAEENSTKPEESAATSSATGEAANTTTTATTAA
ETAAAVTTTTTAATAASEGETAAASGTENESTAAATAEEQGQQATSAPAAQEQSAETAAN
AADDSSKQEGSADASSKKEDDDAQPVKKTYTWNTKEEAKQAFKELLKEKRVPSNASWEQA
MKMIINDPRYSALAKLSEKKQAFNAYKVQTEKEEKEEARSKYKEAKESFQRFLENHEKMT
STTRYKKAEQMFGEMEVWNAISERDRLEIYEDVLFFLSKKEKEQAKQLRKRNWEALKNIL
DNMANVTYCTTWSEAQQYLMDNPTFAEDEELQNMDKEDALICFEEHIRALEKEEEEEKQK
SLLRERRRQRKNRESFQIFLDELHEHGQLHSMSSWMELYPTISSDIRFTNMLGQPVFSSG
STALDLFKFYVEDLKARYHDEKKIIKDILKDKGFVVEVNTSFEDFVTVISSTKRATTLDA
GNIKLAFNSLLEKAEAREREREKEEARKMKRKESAFKSMLKQATPPIELDAVWEDIRDRF
VKEPAFEDITLESERKRIFKDFMHVLEHECQHHHSKNKKHSKKSKKHHRKRSRSRSGSES
EDDDSHSKKKRQRSESRSVSERSSSAESERSYKKSKKHKKKSKKRRHKSDSPESDIEREK
DKKERERESEKDRARQRSESKHKSPTKKRPGKDSGNWDTSGSELSEGELEKQRRTLLEQL
DEDQ
NT seq
3075 nt
NT seq
+upstream
nt +downstream
nt
atgtcgggcggcgactccgcggcggcggcggccgcggcctcccctcagccactgcccttc
tcgctgcccaagccgccccccctcatgcagctgacgccgggggacgccgtccggcccgtg
gccgccgccgccgccgaccaatcgccgaagggcagccggctggcgggccgccccgattgg
ccggcgggcaagccagtcagcctgctggcgccgctgctcccgccccgcggcgagcccgag
cccctgatgcccttcgggccctcgtcgcggcagccgctgcgggggcggctcctgggcagg
tgcggcgggggcagcctgctgagccccgccatgcggcccggggccgtcgaccgcggctcg
cttatgatgggacacccagggatgccacattacccgcccatgggaatgcaccccatgggg
cagaggccaccgaacatgccgccggttccgcatggtatgatgcctcagatgatgcctccc
atgggaggaccaccgatggggcagatgcctggaatgatgcagtcggtaatgcccggaatg
atgatgtctcacatgtcccaagctgctatgcagcctacagttccgccaggggtgaacagc
atggacgcgcaagtaggtgtaacgccacctggaactcagagctctgttttgtttcgccct
cagacaacgcatcccgtagtttgtgcagctcagcaaaccgccacaaccaacagttctgtt
aacgaagagcactctaaacagaaatctacgtggacggaacacaaatcacctgatggaaga
acatactactataatactgaaacaaagcagtctacctgggagaagccagatgatctcaaa
acaccagctgagcaattgttgtcgaagtgtccctggaaagagtacaaatctgattctgga
aagccatattactataattcccaaacaaaggaatcgcgctgggcaaaacccaaagaactt
gaagatcttgaagcaatgattaaagcagaagaaaacagcaccaagcctgaagagtcagct
gcaacgtcatctgctacgggagaagcagcaaacacaaccaccacagccacaactgctgcg
gaaaccgcagcagctgtaaccaccaccactactgcagcaacagcagcctctgaaggcgaa
actgctgcagcttctgggacagaaaatgagagtactgccgcagccacagcagaggaacag
ggacagcaagcaacttctgcacctgctgcacaggaacagagtgcagaaactgcagctaac
gcagcggatgattcttccaagcaggagggttcagcagatgcttcttcaaagaaagaggac
gatgatgcacagccagttaaaaaaacctatacgtggaatacaaaggaagaagcaaagcaa
gcatttaaagaactcctaaaagaaaagagagtaccgtctaatgcgtcttgggagcaagct
atgaagatgatcattaatgatcctagatacagtgctttggcaaagttgagtgaaaaaaag
caagcctttaatgcttacaaagttcaaacagaaaaagaagaaaaagaagaagcaagatca
aaatacaaagaagctaaagaatccttccagcgttttcttgaaaaccatgaaaagatgaca
tccacaacaagatacaaaaaagctgaacaaatgtttggggagatggaagtctggaatgca
atatctgagcgtgatcgtcttgaaatttatgaggatgtcttgttttttctgtctaagaaa
gagaaggaacaagccaaacagttgcgaaagaggaattgggaagctttaaagaacatacta
gataacatggctaatgtcacttactgcactacttggtcagaggctcagcagtatctgatg
gacaatcctacgtttgcagaagatgaggaacttcagaatatggataaggaagatgcgctg
atctgttttgaagagcatatcagggcactggaaaaagaggaggaagaagaaaaacagaaa
agcttgcttagagaaagaaggcggcagcgtaaaaatagagagtctttccagatattttta
gatgaacttcatgagcatggacaattacattcaatgtcctcttggatggagttgtaccca
accataagctctgacatcagattcactaatatgcttggtcaacctgttttttcatcagga
tcgacagcacttgatcttttcaagttctatgttgaagacttaaaagcacgttaccatgat
gaaaagaagataataaaagatatcttaaaggataaaggatttgtggttgaagtgaacact
tcttttgaagactttgttacggtcatcagctcaactaaaagagctacaactttagatgca
ggaaatatcaagctggccttcaatagtctgctagaaaaggcagaagcccgtgaaagagag
agggaaaaagaagaagctcgtaaaatgaagcgcaaagagtctgccttcaagagtatgttg
aaacaagctactcctccgattgaattggatgctgtctgggaagatatcagagatagattt
gtgaaagagccagcatttgaagacatcactctggagtctgaaagaaaaagaatatttaaa
gatttcatgcatgtactagagcatgaatgtcagcaccatcattcaaagaacaagaaacat
tctaaaaagtctaaaaaacatcacaggaagcggtctcgctctcgttcgggctcagagtct
gaggacgatgatagtcattcaaagaagaaaaggcaacggtcagaatctagatctgtttct
gagcgttcttccagtgcagaatctgagagaagttacaagaagtcaaaaaaacacaagaaa
aagagcaagaagagaagacataagtctgattcaccagaatcagatattgaacgagaaaaa
gacaaaaaagaaagagagagagaaagtgaaaaggatagagctagacaaagatctgaatca
aaacataaatctccgactaaaaaacgacctggaaaagattctggtaactgggatacttca
ggcagtgaactgagcgaaggggagctggaaaaacagaggcggactcttttggaacaactg
gatgaagatcaatga
DBGET
integrated database retrieval system
