Anser cygnoides (swan goose): 106049583
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Entry
106049583 CDS
T04896
Symbol
COL2A1
Name
(RefSeq) collagen alpha-1(II) chain isoform X1
KO
K19719
collagen type II alpha
Organism
acyg
Anser cygnoides (swan goose)
Pathway
acyg04510
Focal adhesion
acyg04512
ECM-receptor interaction
acyg04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
acyg00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
106049583 (COL2A1)
04518 Integrin signaling
106049583 (COL2A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
106049583 (COL2A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
acyg00536
]
106049583 (COL2A1)
Glycosaminoglycan binding proteins [BR:
acyg00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
106049583 (COL2A1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
106049583
NCBI-ProteinID:
XP_066841581
LinkDB
All DBs
Position
32:complement(2495473..2516919)
Genome browser
AA seq
1493 aa
AA seq
DB search
MPGRRPLRLAALSFLLLLLLLVGLAAAQDRDLPEAGGGCVQDGQSYSDKDVWKPEPCRIC
VCDTGTVLCDEIICEELRDCPSPEIPFGECCPICPAEPPAATARQPGPKGQKGEPGDIKD
VVGPRGPPGPQGPAGEQGQRGDRGEKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPPG
LGGNFAAQMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPTGAPGPQGFQGNPGEPGEPG
AAGPMGPRGPPGPPGKPGDDGETGKPGKSGERGPPGPQGARGFPGTPGLPGVKGHRGYPG
LDGAKGEAGAPGAKGESGSPGENGSPGPMGPRGLPGERGRPGPSGAAGARGNDGLPGPAG
PPGPVGPAGAPGFPGAPGSKGEAGPTGARGPEGAQGPRGESGTPGSPGPAGAPGNPGTDG
IPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGETG
PAGPQGAPGPAGEEGKRGARGEPGAAGPVGPPGERGAPGNRGFPGQDGLAGPKGAPGERG
PAGLAGPKGATGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPTGAPGEDGRPGPPGPQG
ARGQPGVMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERG
EQGAPGPSGFQGLPGPPGPPGESGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQG
LQGPRGLPGTPGTDGPKGATGPAGPNGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKG
PEGAPGKDGARGLTGPIGPPGPAGPNGEKGESGPPGPSGAAGARGAPGERGEPGAPGPAG
FAGPPGADGQPGAKGEQGEPGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPG
ATGFPGAAGRVGPPGPNGNPGPPGPPGSAGKDGPKGARGDAGPPGRAGDPGLQGPAGPPG
EKGEPGEDGPAGPDGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGSAG
DRGPPGPVGPPGLTGPAGEPGREGNPGADGPPGRDGAAGVKGDRGETGPVGAPGAPGAPG
APGPVGPTGKQGDRGETGAQGPMGPSGPAGARGMPGPQGPRGDKGETGEAGERGLKGHRG
FTGLQGLPGPPGPSGDQGAAGPAGPSGPRGPPGPVGPSGKDGSNGMPGPIGPPGPRGRSG
EPGPAGPPGNPGPPGPPGPPGTGIDMSAFAGLGQTEKGPDPIRYMRADEAAGGLRQHDVE
VDATLKSLNNQIESIRSPEGSKKNPARTCRDIKLCHPDWKSGDYWIDPNQGCTLDAIKVF
CNMETGETCVYPTPSSIPRKNWWTSKTKDKKHVWFAETINGGFHFSYGDESLSPNTASIQ
LTFLRLLSTEGSQNVTYHCKNSIAYMDEETGNLKKALLIQGSNDVEIRAEGNSRFTYSVL
EDGCTKHTGKWGKTVIEYRSQKTSRLPIVDIAPMDIGGAEQEFGVDIGPVCFL
NT seq
4482 nt
NT seq
+upstream
nt +downstream
nt
atgcccggccgccgcccgctccgcctcgccgccctctccttcctcctcctcctcctcctc
ctcgtcgggctcgccgccgctcaggaccgcgacctcccggaggccggcggcggctgcgtg
caggacgggcagagctacagcgacaaggacgtgtggaagccggagccgtgccggatctgc
gtgtgcgacacggggaccgtgctgtgcgacgagatcatctgcgaggagctgcgggactgc
cccagccccgagatccccttcggagagtgctgccccatctgccccgccgagccgcccgcc
gccaccgcccgacaacctggccccaagggacagaaaggtgaacccggcgatatcaaagat
gttgtaggaccccgagggcctccgggaccgcagggccccgcaggcgagcagggacagcga
ggggaccgcggcgagaaaggggagaagggtgctcccggcccccgcggcagggatggagaa
cccggaacccccggcaaccccggcccccccggcccccccggacctcccggcccccccggc
ctcggtgggaacttcgcagctcagatggcgggcggcttcgacgagaaggctggcggcgcg
cagatgggcgtcatgcagggccccatgggacccatgggaccccgcggcccccccggcccc
actggcgctcccggtccccaaggatttcaaggcaaccccggcgagcctggcgaacccggc
gctgctggtccgatgggtccccggggacctccgggaccgcctgggaaacccggtgacgac
ggcgagacaggcaaacccggcaaatccggcgaacgtggcccccccggcccccagggtgct
cgcggcttccccgggacccccggtctccccggagtgaaaggccaccggggctaccccggc
ttggacggtgccaaaggcgaggcaggagctcccggagccaagggtgaatccggctccccc
ggcgagaacggctcccccggccccatgggtccccgcgggctgccaggagaacgaggacgt
cccggcccctccggcgctgcgggtgctcgcggcaacgacggtctccccggccccgccgga
ccccccggacccgttggcccagccggagcccccggcttccccggcgcccccggctcaaag
ggtgaagcaggccccaccggcgcacgaggtcccgagggtgcccaaggtccccgcggcgaa
tccggcacccccggctctcccggccccgccggcgcccccggtaacccaggcaccgatggc
atccccggcgccaagggctcggcgggtgccccgggcatcgcgggcgctccaggcttcccc
ggcccccgcggcccccccggaccccaaggtgccaccggcccgctgggacccaagggacag
acgggagaacccggcatcgcgggcttcaaaggcgagcaaggaccgaagggcgagacgggc
cccgcaggaccccaaggtgcccccggaccggccggtgaggaaggcaagagaggagcccgt
ggggaacctggtgctgccggccccgtgggcccccccggagagaggggtgctcctggcaat
cgcggcttccccgggcaagacgggctggctggacccaagggtgctccgggtgaacgcggc
cccgctggcctcgctggtcccaagggtgccaccggtgaccccgggcgtcccggagagcct
gggctgcctggagcaaggggtctcaccggccgcccaggcgatgctggacctcaaggcaaa
gtcggcccgaccggcgctcccggtgaggacggccgccccggcccccccggcccgcagggt
gctcgcgggcagcccggcgtgatgggtttccccggtcccaaaggcgctaatggcgagcct
ggaaaagccggcgagaaaggactgcccggtgccccggggctgcggggtcttcctggcaag
gacggtgagacaggagctgccggcccccccggacctgccggtcccgctggcgagagagga
gagcaaggagcccccggtccctccggcttccaggggctgcccgggccaccaggtcccccc
ggagagagcggcaaacccggagaccagggcgttcccggagaagccggtgcccccggtctc
gtcggtcccagaggcgaacgcggcttccccggtgagcgtggctcccccggcgcacaaggg
ctgcaaggtccccgcgggctccccggcacgccaggcaccgacggacccaagggtgcaacc
ggcccggccggccccaacggcgcccagggtcccccagggctgcagggaatgcccggcgag
agaggagcagctggcatcgccggccccaagggtgaccggggagacgtcggcgagaagggt
cccgagggagctccaggaaaggacggcgcacgcggtctgacgggtcccatcggtcccccc
ggccccgctggccccaacggcgagaagggtgaatccggcccccccggtccatctggcgct
gccggtgcccgcggtgcccccggcgagcgtggcgagcccggtgcccccggtcctgctgga
tttgccggccccccgggcgccgacggacaacccggtgccaaaggcgagcaaggagagccc
gggcagaagggtgacgccggcgctcccggtccccaaggtccctcgggcgcacccggcccc
cagggtcccactggtgtaactggtcccaaaggagcccgcggtgctcagggtccccccgga
gccacaggattccccggagccgccggccgcgtgggaccacccggccctaatggtaaccca
ggcccccccggccctcctggctctgctggcaaagacggtcccaagggtgctcgtggcgat
gccggtcccccgggccgtgccggcgaccccgggctccaaggccctgctggcccccctggc
gagaaaggcgaacccggagaggatggccctgcgggtcccgacggcccccccggtccccaa
ggcttggcaggacagcgcggcatcgtcggccttcccggacagcgtggcgagagaggcttc
cccgggctgccagggccatcgggcgaacctgggaagcaaggagcacccggctctgcgggc
gaccgaggcccccccggccccgtgggtccccccggtctgacaggacctgctggcgagcct
gggcgcgagggcaaccccggtgctgacggacccccaggcagagacggcgcagccggcgtg
aagggcgatcgcggcgagaccggccccgtgggtgcccccggcgctcccggtgcccccggc
gctcccggccccgttggtcccaccggcaaacaaggagacagaggcgagacgggtgcacaa
gggcccatgggtccctccggtcctgctggcgctcgaggcatgccgggtccccaagggcct
cgcggtgacaagggtgagactggagaggctggagagagagggctgaagggccaccgcggc
ttcaccggactgcagggtctgcccggaccccccggtccttctggagaccaaggcgctgct
ggtcctgctggtccctccggtcccagaggtccccccggccccgtcggcccctccggcaaa
gacggctccaacggcatgcccggccccatcggcccccccggcccccgcggacggagcggc
gaacctggtcctgcgggtcctcctggaaacccagggccccccggcccccccggccctcca
ggcaccggtatcgacatgtcagctttcgccggcctgggtcagacggagaagggccccgac
cccatccgctacatgcgggcggacgaggccgccggtggcctgcggcagcacgacgtcgag
gtggacgccaccctcaagtccctcaacaaccagatcgagagcatccgcagccccgagggc
tccaagaagaacccggccaggacctgccgcgacatcaagctctgccaccccgactggaag
agcggagactactggatcgacccgaaccagggctgcaccctggacgccatcaaggttttc
tgcaacatggagacgggcgagacctgcgtctacccgacccccagcagcatccccaggaag
aactggtggaccagcaagaccaaagacaagaagcacgtctggttcgcggagaccatcaac
ggcggcttccacttcagctacggcgatgagagcctgtctcccaacaccgccagcatccag
ctgaccttcctccgcctgctgtccaccgagggctcccagaacgtcacctaccactgcaag
aacagcatcgcctacatggacgaggagacgggcaacctgaagaaagccctcctcatccag
ggctccaacgacgtggagatcagagccgagggcaacagcaggttcacctacagcgtcctg
gaggacggctgcacgaaacacactggcaaatggggcaagacagtcatcgagtaccggtcg
cagaagacctcgcgcctgcccattgtagatattgcacctatggacattggtggcgccgag
caggagtttggcgtggatatcggccccgtctgcttcttgtaa
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