Anser cygnoides (swan goose): 106049785
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Entry
106049785 CDS
T04896
Symbol
COL5A3
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-3(V) chain
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
acyg
Anser cygnoides (swan goose)
Pathway
acyg04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
acyg00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
106049785 (COL5A3)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
acyg00536
]
106049785 (COL5A3)
Glycosaminoglycan binding proteins [BR:
acyg00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
106049785 (COL5A3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_3
Laminin_G_1
Motif
Other DBs
NCBI-GeneID:
106049785
NCBI-ProteinID:
XP_066842544
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All DBs
Position
34:504346..523273
Genome browser
AA seq
1775 aa
AA seq
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MEPPPRPAALLALLALLPAATAAVPVDVLQTLGMKDGREGVAVTAGICTRRPGTEDPDFA
FRVDNRTQLSAPTRQLFPDSSFPEDFSILATVRARRGGQAFLLSVYDERGVQQLGVEVGR
SPVFLYEDQDGHPAPERYPVFRKVNLADGRWHRVALAVEGTNVSLLVDCQLLATLPLERG
PRPVVSTEGVTLFGARLLDEEVFEGDIQQLLIVPDPAAAHSYCQLYMPACDQPLLYPLLA
PFPEESDPEPSAAPRRKGKKGKGKGKRKGKGKKRRNKELQEQHEASEPSAVANQASAPTP
TPPSLEDGSPPPVTSSLATTVSVALNRTDPFEDAGEELVLESGEDGAAGAASAELPGYED
YYDGDPASPERFGPAEREETVIRAPQEPSLKGDKGEPAVVEPDRRFEGPPGPPGPAGETG
PLGPPGLPGLPGDPGEQGPAGRPGLPGADGIRGPAGTMIMLPFQFGGDSLKGPTVSFQEA
QAQAILQQAKLAMKGPPGPMGLTGRPGPLGLPGYPGLKGDAGDMGPRGPRGLQGPPGPPG
KLGRRGRAGADGARGLPGDTGPKGDRGFDGLPGLPGEKGHRGDVGKPGPAGNPGEKGARG
SDGLPGPRGQPGEPGMRGLIGSRGSPGPPGPPGASGIDGAPGPKGNVGIQGEPGPPGQQG
NPGPQGLPGPQGPVGLPGDKGPPGKPGIQGVAGADGPPGHPGREGPAGEKGLQGPVGAPG
PVGYPGPRGVKGAFGVRGLKGSKGEKGEDGFPGFKGDMGPKGDRGDQGSLGPRGEDGPEG
LKGQTGPMGEPGAAGPAGEKGKLGVPGLPGYPGRQGPKGSAGFPGPVGLAGEKGKRGKAG
QAGQTGQRGPPGLPGERGLPGPTGKPGPKGDPGHDGAPGVVGEKGPQGPQGPHGFPGTKG
PPGPAGKDGLPGHPGQRGEPGFHGKTGPPGPTGVVGPQGKLGETGPVGERGHPGPPGPPG
EQGLPGAAGREGAKGDPGPAGVAGKSGPPGVHGFPGTRGAPGETGPPGLKGGEGPPGPPG
PHGEYKGSPGERGPTGAAGGIGLPGRXGAQGPPGPLGEKGSPGERGPTGPAGHDGIQGPL
GLPGPPGPPGPAGEDGDKGEMGLPGQKGSKGDKGEAGPPGPPGIQGPIGHPGPAGADGEP
GRRGQQGMFGQKGDEGSRGHPGLSGPPGLQGMPGPPGEKGENGDVGPMGPPGAPGPRGPQ
GPSGAEGPQGMPGGVGQPGAVGEKGEPGEAGDPGAPGEPGPPGVKGDVGEKGDAGPSGAA
GPPGKKGPPGEDGAKGNLGPIGFPGDPGPPGDPGPPGLDGAVGEKGDGGDPGLPGPPGAS
GEPGPPGPPGRRGPVGPVGREGRQGEKGAKGQPGTEGPPGKTGPVGAQGPPGRPGSEGLR
GIPGPAGEQGLLGAPGQAGPPGPLGPVGLPGLKGDPGHKGDKGHAGLIGLIGPPGEMGEK
GDQGLPGIQGPPGPKGDPGLAGPAGPTGPPGPPGLSGPLGQKGSKGSPGALGPRGDTGPP
GPPGPPGRPAELLEPLPSSRSGRHRRAAQGARGEQGTPPDYEGLEEVYASLSSLRTEVER
LRRPLGTPESPARVCKELQLCHPHLQDGEYWIDPNQGCSRDAFRVFCNFTAGGETCLFPD
KKFEAVRLAAWNREKPGTWYSTFRRGKKFSYVDADGNPVPVPQLTFLRLLSASARQNFTL
TCQHAAAWYDAPAASFARALRFRGANDEELGHDHPAAPVRALRDGCQERRGQERTVLEVS
SSRVERLPLMDVAVADFGDANQKFGFELGPVCFVG
NT seq
5328 nt
NT seq
+upstream
nt +downstream
nt
atggagccccccccgcgccccgccgccctcctcgccctcctcgccctgctgcccgcggcc
accgcagccgtgcccgtggatgtgctgcagacgctgggcatgaaggacggccgggaaggc
gtcgccgtcaccgccgggatctgcacgcggcgccctggcaccgaggaccccgacttcgcc
ttccgcgtggacaaccgcacgcagctcagcgcgcccaccaggcagctcttccccgattcc
tccttccccgaggatttctccatcctggccacggtgcgtgcccggcgcggcggccaagcc
ttcctgctctccgtctacgacgagcgcggcgtgcagcagctgggggtggaggtcgggcgc
tcgcccgttttcctctacgaggaccaggacgggcacccggcccccgaacgctacccggtt
ttccgcaaggtgaacctggccgacggcaggtggcaccgcgtggcgctggccgtggagggc
accaacgtgtccctgctggtggactgccagctcctcgccacgctgccgctggagcgagga
ccccggcccgtcgtcagcaccgagggggtgacgcttttcggggcgcgcctgctggatgag
gaggtgttcgagggcgacatccagcagctgctgatcgtgccggaccccgcggccgcccac
tcctactgccagctctacatgccggcctgcgaccagcccctgctctacccgctcctggcc
cccttcccggaggagagcgacccggagcccagcgccgccccgcgtaggaagggcaagaag
ggcaaggggaaaggcaagcgcaaggggaaaggcaagaagaggaggaacaaggagctgcag
gagcagcacgaggcctccgagccctctgccgtggccaaccaggccagcgcgcccacgccg
acgccgccgtctctggaggacggctccccgccgccggtcacctccagcctggccaccacc
gtgagcgtcgccctgaaccgcaccgaccccttcgaggacgctggcgaggagctcgtgctg
gaatccggggaggacggagccgctggggctgccagcgcggagctgccaggctacgaggac
tactacgacggggaccctgcgagcccggagcggttcggcccggccgagcgggaggagacg
gtgatccgggctccccaggagcccagcctgaagggggacaagggcgagccggccgtcgtt
gagccggatcggcgatttgaggggccgccgggacccccgggccctgcgggggaaacggga
cccctgggaccaccggggctcccagggctgcccggggaccccggagagcagggccccgcg
ggacggccggggctgccaggagccgacgggatccgcggcccagccgggaccatgatcatg
ctgccgttccagtttggcggagactccctcaagggccccaccgtctccttccaagaagcc
caagcccaggcgatcctgcagcaggcgaagcttgccatgaagggcccccccggccccatg
gggctcaccggccgtccgggtccgctgggtctgcccggatacccgggcctgaaaggggac
gcaggggacatggggccgcggggtccccggggactgcagggaccaccgggaccaccgggg
aagctgggcagacggggtcgcgctggagcagatggtgccaggggtctcccgggggacacc
ggacccaagggtgaccggggcttcgatggcttgccggggctgccgggggagaagggccac
aggggtgacgtggggaagccgggaccagcgggcaaccccggggagaaaggcgccaggggc
tcggatggcttgccgggaccgcgggggcaaccgggggaacccggcatgcgagggctcatc
ggctcccgcggctcccccggccccccgggaccaccgggtgccagcggcatcgacggcgcg
ccgggacccaagggcaacgtgggaatccaaggggagcctggccccccgggacagcaagga
aaccccggtccgcagggtctgcccggcccccagggccccgtcgggctgccaggggacaag
ggcccgccggggaagccaggaatccaaggggtggctggggccgacgggcccccgggtcac
cctggccgagaagggccggccggagagaagggcctccagggtcctgtgggtgccccaggt
cccgtcggctatccaggaccccgtggggtgaagggagcttttggggtgcggggcctgaag
ggcagcaaaggggagaagggtgaagacggattccctggcttcaagggggacatgggtccc
aaaggcgacaggggcgaccagggctcgctgggtccccgcggcgaggacggccccgagggg
ctgaagggacagacgggtcccatgggggagccgggcgctgctggccccgcgggcgagaag
ggcaagctgggggtgccgggcctcccgggctaccccgggcgccagggccccaagggatcc
gccggcttcccgggtcccgtggggctggcaggagagaaaggcaagaggggcaaggctggc
caggccgggcagacgggacagcgagggcccccgggcctgccgggggagcgagggctgccc
ggccccacggggaaacccggcccaaagggagatcccggccacgacggggcccccggcgtg
gtgggagagaagggccctcaaggtccgcagggtccccacggcttcccgggcaccaaaggg
ccccctggccccgccgggaaggacggcttgccgggacacccggggcagcgcggcgagccg
ggatttcacggcaaaaccggcccccccggccccacgggggtggtgggaccccagggtaaa
ttgggcgaaacggggccggtgggcgagagggggcacccaggccctcctggcccccccggg
gagcaggggctgcctggggctgctggccgagaaggagccaagggagaccccggcccggct
ggcgtcgccggtaagagcggccccccgggcgtccacggctttcccggcacgcggggggca
cccggagagacgggtcctcccggcctgaagggtggcgaaggcccccccggcccccccggg
ccccacggtgagtacaaaggttcccccggcgagcgaggccccacgggggctgcgggaggc
atcggcctgcccggccgtnggggggcacagggcccccccggccccctgggcgagaagggg
tccccgggcgagcggggtcccacgggtccggccgggcacgacgggatccagggccccctg
gggctgccggggccccccggtccccccggccccgctggagaggatggggacaagggcgag
atggggcttcccggacagaagggcagcaaaggcgacaagggcgaggcgggccctccggga
ccgccaggaatccagggacccatcgggcaccccggccctgcgggagcggacggggaaccg
gggcgccgcgggcagcaggggatgtttgggcagaaaggagatgagggatcgcggggtcac
cccggcctgagcggcccccccggactgcagggcatgccaggccccccaggcgaaaagggc
gaaaacggagacgttggccccatgggaccccctggagcgccaggaccccgtgggccgcag
ggacccagcggtgccgagggtccccagggaatgccgggcggcgtgggacagccgggagcc
gtgggagaaaagggtgagcccggtgaagccggggaccccggagcccctggggagcctggc
ccacccggcgtgaaaggagacgtgggggagaagggagacgcagggccgtcgggggcagcc
ggaccccccggcaagaagggccccccgggagaggatggagccaaaggcaacctgggtccc
atcggcttcccaggggatcccggcccccccggagaccccggcccaccgggtctggacggg
gctgttggagagaagggggacggtggggaccccggcctgccgggtccgccaggcgcgtca
ggggaaccggggcccccaggcccccccgggcggaggggacccgtggggcccgtggggcgc
gagggccgtcagggcgagaagggtgccaagggtcagcccggcaccgaggggccgcctggg
aagacgggacccgtgggggcgcaggggcccccggggcggccgggctccgaagggttgcgg
gggatccctggccccgcgggcgaacaaggcctcctgggggcaccgggacaagcgggacca
cccggccccctgggccccgtgggattgcccggcctcaagggagaccccggccacaaggga
gataagggccacgctggcttgattgggctcatcggaccgccgggggagatgggggagaaa
ggagaccaggggctcccgggcatccagggccccccgggacccaaaggagaccccggtttg
gctggccccgccggccccaccggcccccccggcccccccgggctctcgggtcccttgggc
cagaagggctccaaaggctcaccgggcgctctgggtccccgaggtgacacaggcccccca
gggcccccaggaccaccgggccgcccggctgagctgctcgagccgctgccctcgagccgg
agcgggaggcaccggcgggcagcccagggggctcggggcgagcagggcacccccccggac
tacgaggggctggaggaggtgtacgcctcgctcagctccctgcgcaccgaggtcgagcgg
ctgcggcggcccctgggcacccccgagagccccgcgcgcgtctgcaaggagctgcagctc
tgccacccgcacctgcaggacggcgagtactggattgaccccaaccagggctgctcccga
gacgccttcagggttttctgcaacttcacagccggcggcgagacctgcctcttccccgac
aagaagttcgaggccgtccgcctggctgcctggaaccgggagaagccggggacgtggtac
agcaccttcaggaggggcaagaagttctcctacgtggacgcggacgggaacccggtgccc
gtgccccagctcaccttcctgcgcctcctgagcgccagcgcccgccagaacttcacgctg
acgtgccagcacgccgccgcctggtacgacgcccccgccgcctccttcgcccgcgccctg
cgcttccgcggggccaacgacgaggagctgggccacgaccacccggccgcccccgtccgc
gccctccgcgacggctgccaggaacgccgcggccaggagcggacggtgctggaggtgtcc
tcgtcccgcgttgagcggctgccgctgatggacgtggccgtggccgacttcggagacgcc
aaccagaaattcggcttcgagctgggccccgtctgcttcgtgggctga
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