Anser cygnoides (swan goose): 136788251
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Entry
136788251 CDS
T04896
Symbol
XAB2
Name
(RefSeq) LOW QUALITY PROTEIN: pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
acyg
Anser cygnoides (swan goose)
Pathway
acyg03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
acyg00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
136788251 (XAB2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acyg03019
]
136788251 (XAB2)
03041 Spliceosome [BR:
acyg03041
]
136788251 (XAB2)
Messenger RNA biogenesis [BR:
acyg03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
136788251 (XAB2)
Spliceosome [BR:
acyg03041
]
Complex B
Other components
Prp19-related factors
136788251 (XAB2)
Complex C
136788251 (XAB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
TPR_14
HAT_PRP39_N
HAT_PRP39_C
TPR_2
TPR_8
TPR_12
TPR_19
Suf
TPR_15
TPR_1
ARM_TT21
TPR_16
PPR
TPR_7
Trypan_PARP
ATG1-like_MIT2
Motif
Other DBs
NCBI-GeneID:
136788251
NCBI-ProteinID:
XP_066842555
LinkDB
All DBs
Position
34:136139..152853
Genome browser
AA seq
904 aa
AA seq
DB search
MAAEAAAVAAMEVPEGAGPEPEPGPGPEAEPGEGPEPEREPEPGPEEEPGMEQEPEPGPG
AEPGPARAELRFDEADVPHEEQLLRDPFSVRGWLRYLRARQGAPRARLNLLHERALRELP
GSYKLWYAYLKLRRRQVRFKCVTDPAYEEANNCHERALVFMHKMPRIWLDYCQFLVGQGR
ITRTRRTFDRALRALPITQHHRLWPLYLRFVRLYPLPETAVRVYRRYLKLCPEGAEQYVQ
YLRSVGRLDEAALRLAALVNDERFVSAEGKSKYQLWQELCELISQHPERVRSLDAGAIIX
GGLRRFTDHLGRLWCALADCYIRSGHFEKARDVYEEAVQTVPTVRDFSQVFDSYAHFEES
LIAARMESXGPPGLGEDGEVDLELRLARLERLVGRRPLLLNSVLLRQNPHNVHEWHKRVR
LHHGHPEQIISTYTQAVRTVDPLKATGRPHSLWVAFARFYEDNGQLDDARAILSRATRVR
FRQVPDLAAVWCERGELELRHGHHQAALSVLRKATALPARRAEYFDSSEPVQNRLYKSLR
VWAMLADLEESLGTFQSTKAVYERILDLRIATPQIVINYGLFLEERGYFEESFKAYERGI
ALFRWPNVADVWHTYLTKFVARYGGRKLERARDLFEQALDGCPQKYAKTIYLLYAKLEEE
FGLARHAMAVYERATRAVLPAEQRDMFNIYIKRAAELYGVTHTRPIYEKAIEVLGDEQAR
EMCLRFADMECKLGEVDRARAIYTYCSQICDPRITANFWQTWKDFEIRHGNEDTIREMLR
IKRSVQATYNTQVNFMASQMLKVYSNATGTVSDLAPGQSGLDDMKLLEQRAEQLAAEAQR
DXPRPKDRVLFVRAEGPREALAALSQQGNPDEIDLGDEDEPEPDEVQLEQKRVPSSVFGG
LKDD
NT seq
2715 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggaggccgcggcggtggcggcgatggaggtgccggagggagcggggccggaa
ccggaaccggggccgggaccggaagcggaaccgggagaggggccggaaccggagcgggaa
ccggaaccgggaccggaagaggagccgggcatggagcaagaaccggagccggggcccggg
gcggagccggggcctgcgcgggccgagctgcgcttcgacgaggcggacgtgccccacgag
gagcagctgctgcgcgaccccttctcggtgcgggggtggctgcgctacctgcgggcgcgc
cagggggcgccgcgggcccgcctcaacctcctgcacgagagggcgctgcgggagctgccc
ggcagctacaagctgtggtacgcctacctgaagctgcggcggcgccaggtgaggttcaag
tgcgtcaccgaccccgcctacgaggaggccaacaactgccacgagcgcgccctcgtcttc
atgcacaagatgccccgtatctggctggactactgccagttcctggtggggcagggccgc
atcacgcgcacgcgccgcaccttcgaccgggcgctgcgggcgctgcccatcacccagcac
caccgcctgtggccgctctacctgcgcttcgtgcgcctctaccccctgcccgagaccgcc
gtgcgcgtctaccgccgctacctcaagctgtgccccgagggcgcggagcagtacgtgcag
tacctgcgctccgtggggcgcctggacgaggcggcgctgcgcctggccgccctggtcaac
gacgagcgcttcgtgtccgccgagggcaagtccaagtaccagctgtggcaggagctgtgc
gagctgatctcgcagcaccccgagcgcgtgcgctcgctggacgcgggggccatcatcnnc
ggggggctgcggcgcttcaccgaccacctggggcgcctctggtgcgccctggccgactgc
tacatccgcagcgggcacttcgagaaggcgcgggacgtgtacgaggaggcggtgcagacg
gtgcccacggtgcgggacttcagccaggtgttcgacagctacgcgcacttcgaggagagc
ctcatcgccgcccgcatggagagcnngggccccccggggctcggcgaggacggcgaggtg
gacctggagctgcggctggcgcgcctggagcgcctggtggggcggcgcccgctgctgctc
aacagcgtgctgctgcgccagaacccccacaacgtgcacgagtggcacaagcgcgtgcgc
ctgcaccacgggcaccccgagcagatcatcagcacctacacgcaggccgtgcgcaccgtg
gaccccctgaaggccaccgggcgcccccacagcctctgggtggccttcgcccgcttctac
gaggacaacgggcagctggacgacgcccgcgccatcctgagccgcgccacgcgggtgcgc
ttccggcaggtgcccgacctcgccgccgtctggtgcgagcgcggcgagctggagctgcgc
cacggccaccaccaggccgccctcagcgtgctgcggaaagccacggcgctgcccgcccgg
cgggccgagtacttcgacagctcggagccggtgcagaaccgcctctacaagtccctgcgc
gtctgggccatgctggcagacctggaggagagcctgggcaccttccagtcgaccaaggcg
gtgtacgagcgcatcctggacctgcgcatcgccaccccgcagatcgtcatcaactacggg
ctcttcctggaggagcgcggctacttcgaggagagcttcaaggcgtacgagcgcggcatc
gcgctgttccgctggcccaacgtggcggacgtgtggcacacctacctcaccaagttcgtc
gcccgctacgggggccgcaagctggagcgggcgcgggacctcttcgagcaggcgctggac
ggctgcccccagaaatacgccaagaccatctacctgctgtacgccaagctggaggaggag
ttcgggctggcgcggcacgccatggccgtgtacgagcgcgccacgcgcgcggtgctgccg
gccgagcagcgcgacatgttcaacatctacatcaagcgcgccgccgagctctacggcgtc
acccacacccggcccatctacgagaaggccatcgaggtgctgggggacgagcaggcgcgc
gagatgtgcctgcgcttcgccgacatggagtgcaagctgggcgaggtggaccgggcgcgc
gccatctacacctactgctcccagatctgcgacccccgcatcacggccaacttctggcag
acgtggaaggactttgagatccgccacggcaacgaggacacgatccgcgagatgctgcgc
atcaagcgcagcgtccaggccacctacaacacccaggtcaacttcatggcctcccagatg
ctcaaggtctacagcaacgccaccggcaccgtgtcggacctggcgccggggcagagcggg
ctggacgacatgaagctgctggagcagcgcgccgagcagctggcggccgaggcgcagcgc
gacngcccccgccccaaggacagggtgctcttcgtcagggccgagggcccgcgggaggcc
ctggccgcgctctcccagcaggggaaccccgacgagatcgacctgggggacgaggacgag
cccgagcccgacgaggtgcagctggagcagaagcgggtgccctcctccgtcttcgggggg
ctcaaggacgactga
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