Anser cygnoides (swan goose): 136788333
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Entry
136788333 CDS
T04896
Symbol
SKIC2
Name
(RefSeq) LOW QUALITY PROTEIN: superkiller complex protein 2
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
acyg
Anser cygnoides (swan goose)
Pathway
acyg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
acyg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
136788333 (SKIC2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acyg03019
]
136788333 (SKIC2)
Enzymes [BR:
acyg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
136788333 (SKIC2)
Messenger RNA biogenesis [BR:
acyg03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
136788333 (SKIC2)
mRNA degradation factors
3'-5' decay
Ski complex
136788333 (SKIC2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
DEAD
MTR4_beta-barrel
Helicase_C
DEXQc_Suv3
ResIII
MTR4-like_stalk
Ski2_N
Motif
Other DBs
NCBI-GeneID:
136788333
NCBI-ProteinID:
XP_066842721
LinkDB
All DBs
Position
35:2356332..2384914
Genome browser
AA seq
1221 aa
AA seq
DB search
MGQCCPPGPLHLPLALLELGCGGAXELAPGSAPPRGTLPQGLPPXRPPAVAELEGRFLGT
PAWLXPHRHERARRCWTRAAAPRGLLALEPTPPHGSLRALRDPRTGALRGFAEELNEGTA
SPPPVGAPPRRPGGAPLELLHVRGATEEDLDLENGLLTXPPGMKHGVDFQPRAGGAPLSL
SGLLGTLDTLELGGGEDEEERGGGRGGGPRPPQPPQEPRGGAPRGPPRRADSLEELVMKE
VLAPPPPPPQPPGAPPRSSGPWRRDASTPVEGFEELVPDPAFKWPFRLDPFQQRAVLCLE
RGHSVLVAAHTSAGKTAVAEYAIALARRHMTRTIYTSPIKALSNQKFRDFKTTFGDVGLL
TGDVQLRPEASCLIMTTEILRSMLYNGSDVIRELEWVIFDEVHYINDAERGVVWEEVLIM
LPEHVKLILLSATVPNALEFAQWVGRTKRRRLRVISTRRRPVPLEHFLYTGNGPRTREQL
FLLLDARGTFNTQGYYAAVEAKKERASKHAQTFGAKQXHPGGTGPGQDRGVWLALLGVLR
ERGQLPVVAFTFSRSRCDEHAAALGSLDLASAADKARIRAFFQRCVARLRGSDRRLPQVL
HMAELLQRGIGVHHGGVLPLLKEVVEMLFSQGLVKVLFATETFAMGVNMPARTVVFDSIR
KHDGNGFRDLLPGEYVQMSGRAGRRGLDATGTVIILCKGPVPELADLHRVLLGRPTRLQS
QFRLTYGTILSLLRAPALRVEDLMRSSFSEFPLRRDAPAQERRVAELRAALAALGEPPEX
GALGDLPQYLEAVQGLREARAELQRRVAQSVAGLKALAPGRVVVVDTPXHRNALGLLLQV
TPESGGGRRLAVLVLCEKPPEGEPPXPPPDAPYPEDLLLARFFLPEGPPGHALEELRPEE
LAAVTGRTLREPPPRLLQELRRRRYRGGEGPPGPEVAGVVQELLRLXGGAPGALPLLDPV
GALQLRDPPXVEAAARIRALGXALGGFQCVHSPRFAQQYAQLAARRELQAQVEQLQFRLS
DRSLLLLPEYRQRLDVLRALGYVGXGGAVRLAGRVAAALSAQELLLTELLLGNVLAPLRP
EQAAALLSCAVHPGRGESPPGYPPRDPQGMEQIRAVAERLGRLQEQWGLPQSAEDFVAQL
GFGMVEVVYEWARGMPFAAIARLAPVQEGAVVRCIQRLEELCRDLRRAAHLVGEPGLAAK
MEAASAMIKRDIVFAASLYTQ
NT seq
3666 nt
NT seq
+upstream
nt +downstream
nt
atggggcagtgctgccccccgggccccctgcacctgcccctggcgctgctggagctgggc
tgcgggggggctntcgagctggcgccgggcagcgcccccccccgcggcacgctcccccag
gggctgccccctnntcgcccccccgcggtggcggagctggaggggcgatttttggggacc
cccgcctggctgnncccccaccggcacgagagggcccggaggtgctggacgcgggcggcg
gcgccgcgggggctcctggcgctggagcccacccccccccacggctccctgcgggcgctg
cgggacccccgcaccggggccctgcggggcttcgccgaggagctgaacgagggcacggca
tcgccccccccagttggtgccccccccaggcgccctggaggagcccccctggagctgctg
cacgtgcggggggcgaccgaggaggatttggacctggagaacggtctgttaacgnacccc
ccggggatgaaacacggcgtcgacttccagcctcgagccgggggggccccgctgtcgctc
tccggcctcttggggactttggacaccctggagctgggggggggggaggacgaggaggag
cgcgggggggggcgcggggggggtccccgccccccccaacccccccaggagccccggggg
ggcgccccccgcggccccccacggcgcgccgacagcttggaggagctggtgatgaaggag
gtgctggcgccccccccgccccccccgcagccccccggagcccccccgaggagcagtggg
ccgtggaggagggacgccagcacccccgtggagggcttcgaggagctggtcccggacccc
gcgtttaagtggccgttccgcctggacccgttccagcagcgggcggtgctgtgcctggag
cgcggccactcggtgctggtggccgcccacacctccgccggcaagacggccgtggccgag
tacgccatcgccctggcgcgccggcacatgacgcggaccatctacacgtcgcccatcaag
gcgctctccaaccagaagttccgcgacttcaagaccactttcggcgacgtggggctgctg
acgggcgacgtgcagctgcgccccgaggcctcctgcctcatcatgaccaccgagatcctg
cgctccatgctgtacaacggctccgacgtcatccgcgagctggagtgggtgattttcgac
gaggtgcactacatcaacgacgccgagcgcggggtggtgtgggaggaggtgctgatcatg
ctgcccgagcacgtcaagctcatcctgctcagcgccaccgtgcccaacgccctggagttc
gcccagtgggtggggcgcaccaagcggcggcggctgcgggtgatcagcacgcggcggcgc
ccggtgcccctcgagcatttcctctacaccggcaacgggccccgcacgcgggagcagctc
ttcctgctgctggacgcccgcggcaccttcaacacccaggggtactacgcggccgtggag
gccaagaaggagcgggcgagcaaacacgcgcagaccttcggggccaagcagncccaccct
gggggcaccggccccgggcaggaccggggggtctggctggcgctgctgggggtgctgcgg
gagcggggccagctcccggtggtggccttcaccttctcgcgcagccgctgcgacgagcac
gcggccgccctgggctccctcgacctggcctcggccgccgacaaggcgcggatccgcgcc
ttcttccagcgctgcgtcgcccgcctgcgcggctccgaccgccgcctgccccaggtgctg
cacatggcggagctgctgcagcgcggcatcggggtgcaccacggcggggtgctgccgctg
ctcaaggaggtggtggagatgctcttcagccaggggctggtcaaggtgctgttcgccacc
gagacgttcgccatgggggtgaacatgccggcgcgcaccgtcgtcttcgactccatccgc
aagcacgacggcaacggcttccgcgacctcctgcccggcgagtacgtgcagatgtcgggg
cgcgcggggcgccgcgggctggacgccaccggcaccgtcatcatcctctgcaaggggccc
gtgcccgagctggccgacctgcaccgcgtgctgctgggccgcccgacgcggctgcagtcc
cagttccgcctgacctacggcaccatcctcagcctgctgcgcgcccccgcgctgcgcgtc
gaggacctgatgcgcagcagcttctccgagttccccctgcgcagggacgcgccggcccag
gagcggcgcgtggcggagctgcgggcggcgctggcggcgctgggggagcccccggagnng
ggggccctgggcgacctcccccagtacctcgaggccgtgcaggggctgcgggaggcacgg
gcggagctgcagcggcgcgtggcgcagtcggtggcggggctgaaggcgctggcccccggg
cgggtggtggtggtcgacacccccnggcaccgcaacgccctggggctcctcctgcaggtg
acccccgagagcgggggggggcgccgcctggccgtgctggtgctgtgcgagaagcccccc
gagggggagccccccnagccccccccggacgccccctaccccgaggacctgctgctcgcc
cgcttcttcctgcccgaaggcccccccgggcacgcgctggaggagctgcgccccgaggag
ctggcggccgtcacggggcgcacgctgcgggagccccccccgcgcctcctgcaggagctg
cggcgccgccggtaccgggggggggaagggccccccgggccggaggtggcgggggtggtg
caggagctgctgcggctgngcgggggggcgccgggggcgctgccgctgctcgacccggtg
ggggccctgcagctccgcgaccccccgnccgtggaggcggccgccaggatccgggccctg
gggngggccctggggggcttccagtgcgtgcacagcccccgcttcgcccagcagtacgcc
cagttggccgcccgccgggagctgcaggcgcaggtggagcagctccagttccgcctctcc
gaccgctcgctgctgctgctgcccgagtaccggcagcgcctcgacgtgctgcgggcgctg
ggctacgtgggcngcgggggcgcggtgcggctggcggggcgcgtggcggcggcgctgagc
gcccaggagctgctgctcaccgagctcctgctgggcaacgtcctggccccgctgcgcccc
gagcaggcggccgcgctgctctcctgcgccgtgcacccgggccgcggcgagagccccccc
ggctaccccccccgcgacccccagggcatggagcagatccgggcggtggccgagcgcctg
ggccggctgcaggagcagtgggggctgccccagagcgccgaggacttcgtggcgcagctc
ggcttcggcatggtcgaggtcgtctacgagtgggcccgcggcatgcccttcgcggccatc
gcccgcctggcgccggtgcaggagggggccgtggtgcgctgcatccagcgcctggaggag
ctgtgccgggacctgcggcgcgccgcccacctcgtgggggagcccggcctggccgccaag
atggaggccgcctccgccatgatcaagcgcgacatcgtcttcgccgccagcctctacacg
caataa
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