Amycolatopsis cynarae: ORV05_03555
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Entry
ORV05_03555 CDS
T09969
Name
(GenBank) ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
acyn
Amycolatopsis cynarae
Pathway
acyn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
acyn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ORV05_03555
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acyn03019
]
ORV05_03555
03400 DNA repair and recombination proteins [BR:
acyn03400
]
ORV05_03555
Enzymes [BR:
acyn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ORV05_03555
Messenger RNA biogenesis [BR:
acyn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ORV05_03555
DNA repair and recombination proteins [BR:
acyn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
ORV05_03555
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
DUF3553
AAA_30
Cas3-like_C_2
MarR_2
PcrA_UvrD_tudor
Motif
Other DBs
NCBI-ProteinID:
WAL66891
LinkDB
All DBs
Position
complement(743179..744759)
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AA seq
526 aa
AA seq
DB search
MSTREKLQSAAANTFGWSRLRPEQRTAMEHLVEGRDVLVVLPTGAGKSAIYQVPGLLLPG
PTLVVSPLTALQRDQVAAIAESHAPRAVAVNSAQAAKVSERAWDAVDTGEAEYLFLAPEQ
LAKEEVLRQLDEVAPSLFVVDEAHCVSVWGHDFRPDYLRLSEVIERLGHPRVLALTATAD
GPVRDDIVRHLGMRDPVRVVAGFDRPNLHLAVRHAVDDKGKREGVVDWVTAAPKPGLVYA
ATRKDTERYAEALGDRTAAYHAGLKASERRRVHDRFMAGELDVVVATSAFGMGIDKPDVR
FVAHASAPESLDSYYQQIGRAGRDGERADAMLFYRAEDLGLQRFLTSHRQDTDGVRQVAE
AVREHEGAANPREIGDAVDQSRRRAMNNLNLLEQAHLVSFSPHGVDYRGDEAEDVAPRVA
EIAEQRRRLDRSRVEMLREYAETRSCRRQFLLGYFGETLDEPCGFCDTCEAGTARGHTVG
GKFSPGSEVRHERWGTGRVVHGEPDRVTVLFGEAGYRTVKPDHLRS
NT seq
1581 nt
NT seq
+upstream
nt +downstream
nt
gtgtccacacgcgaaaagctgcagagcgcggcagcgaacaccttcggttggtcccggctc
cgccccgagcagcgaaccgcgatggagcatctcgtcgaagggcgcgacgtcctcgtcgtg
ctcccgaccggggccgggaagtccgccatctaccaggtgccgggcctgctgctgccgggg
ccgacgctcgtggtgtcgcccctgaccgcactccagcgggaccaggtcgccgccatcgcc
gaaagccacgccccccgggcggtggcagtcaattccgcccaggccgccaaggtcagcgag
cgggcctgggacgcggtcgacaccggggaggccgagtacctgttcctcgcacccgagcag
ttggccaaggaggaggtgctgcggcaactcgacgaggtcgcaccgagcctgttcgtggtc
gacgaggcgcactgcgtttcggtgtggggccacgacttccgtcccgactacctccgtctg
tccgaagtgatcgaacggctcgggcatcccagggtgctggcgctgaccgcgaccgccgac
gggccggtgcgcgacgacatcgtgcgccatctcggcatgcgggacccggtccgcgtggtc
gccgggttcgaccggccgaacctccacctcgccgtccggcatgccgtcgacgacaaggga
aagcgggaaggcgtggtggactgggtcacggcggcgccgaaaccgggattggtctacgcc
gcgacccgcaaggacaccgagcggtacgccgaggcgcttggcgaccggaccgcggcctac
cacgcggggctgaaggcgtccgaacgcaggcgggtgcacgatcggttcatggccggtgaa
ctcgacgtggtcgtggcgacctccgcgttcggcatgggcatcgacaaaccggacgtgcgg
ttcgtggcgcacgcctccgcccccgaatccctcgattcctactaccagcagatcgggcgg
gcgggccgggacggcgagcgtgccgacgcgatgctgttctaccgcgcggaagatctcggg
ctgcaacggtttctcacctcccaccggcaggacaccgacggggtgcggcaggtcgcggaa
gcggtgcgggaacacgaaggagccgcgaacccgcgcgaaatcggcgacgccgtggaccag
tcgcgccggcgtgccatgaacaacctgaacctgctcgaacaggcccacctggtcagtttc
tccccgcacggggtcgactaccgcggtgacgaagcggaggacgtcgcgccccgcgtcgcc
gagatcgccgagcagcgcaggcggctcgaccggtcccgggtcgaaatgctgcgcgagtac
gcggaaacccggtcctgccgcaggcagttcctgctcggctacttcggcgagacgctggac
gagccgtgcgggttctgcgacacctgcgaggccgggacggcgagggggcacaccgtcggc
gggaagttctcaccgggcagcgaagtccgccacgaacggtggggaacgggccgggtggtg
cacggcgaaccggaccgggtgaccgtgctgttcggggaagccggataccgcacagtgaaa
cccgaccacctacggtcgtag
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