Amycolatopsis cynarae: ORV05_22145
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Entry
ORV05_22145 CDS
T09969
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
acyn
Amycolatopsis cynarae
Pathway
acyn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
acyn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ORV05_22145
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acyn03019
]
ORV05_22145
Messenger RNA biogenesis [BR:
acyn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ORV05_22145
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_6
Motif
Other DBs
NCBI-ProteinID:
WAL63696
UniProt:
A0ABY7AUU8
LinkDB
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Position
complement(4645935..4647641)
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AA seq
568 aa
AA seq
DB search
MNGRSPQPTGPGPLTPPPPLPDGGLRVVALGGIGEVGRNMTVFEYDGRLLIVDCGVLFPE
DAQPGVDLILPDFRAIEDRLEDIDALVLTHGHEDHIGAVPFLLRLRPDLPVYGSRFTLAL
LDAKCREHRQRPKLVEVTEGERRRVGAFDLEFFAVNHSIPDALAVAIRTPAGVVLHTGDI
KLDQLPLDGRLTDLAGFSRLGDEGVDLLCIDSTNAEVPGFVTPERDIGPVLDDVIGRVTQ
RVIVACFASHVHRVQQVLDAAQRHGRRVAFVGRSMVRNMGIAADLGLLAIPEGLLIDLDQ
AVTLPETKVLFVSTGSQGEPLSALSRMARGEHRQISIRAGDTVVLASSLIPGNETAVFGV
VNGLVRLGAHVVHQGNAKVHVSGHSSAGELLFLYNAIRPSNVMPVHGEWRHLRANGELAV
RTGVAPENVVLAEDGVVVDLVDGRARTTGRVEVGHVYVDGLSVGDVGESTLSDRLVLGEG
GFIAITVAVDSTTGRAVSTPTVSGRGFSDDPKALDAVVPLVEMELSRTEAEGITESHRIA
QAVRRVVGRWVAETYRRRPMIVPTVIPV
NT seq
1707 nt
NT seq
+upstream
nt +downstream
nt
atgaacgggcgatccccgcaacccacaggaccggggcccctcaccccgccgcccccgctg
ccggacggcggcctccgggtcgtcgccctcggcgggatcggcgaggtcgggcggaacatg
accgtcttcgagtacgacggcaggctgctcatcgtcgactgcggggtgctgttccccgag
gacgcacagcccggggtcgacctgatcctgcccgacttccgggcgatcgaggaccggctc
gaggacatcgacgccctcgtgctcacccacgggcacgaggaccacatcggcgcggtgccg
ttcctgctgcgcctgcgcccggacctgccggtctacggctcgcggttcaccctggcgctg
ctcgacgcgaagtgccgcgagcaccggcagcggccgaagctggtggaggtgaccgaaggg
gagcgccgccgggtgggcgcgttcgacctggagttcttcgcggtcaaccactccatcccg
gacgcgctggcggtggcgatccgcaccccggccggggtcgtgctgcacaccggtgacatc
aagctcgaccagttgccgctcgacggacggctcaccgacctggccggattctcgcggctg
ggcgacgagggcgtcgacctgctgtgcatcgactccacgaacgccgaggtgcccggtttc
gtcacgcccgagcgggacatcggcccggtgctcgacgacgtgatcggccgcgtcacccag
cgtgtgatcgtggcctgcttcgccagccacgtgcaccgcgtccagcaggtgctcgacgcc
gcgcagcggcacggccgccgcgtggcgttcgtcggccggtcgatggtgcgcaacatgggg
atcgcggcggacctggggctgctggccatcccggaggggctgctgatcgacctggaccag
gcggtcacgctgccggagacgaaggtgctgttcgtctcgacgggttcgcagggcgagccg
ctgtcggcgctgtcgcggatggcgcgcggtgagcaccggcagatctcgatccgcgccggg
gacaccgtggtgctggccagttcgctcatcccgggcaacgagacggcggtgttcggcgtg
gtcaacggcctggtgcggctcggcgcccacgtggtgcaccagggcaacgcgaaggtccac
gtctccgggcactcctcggcgggcgagctgctgttcctgtacaacgcgatccggccgagc
aacgtgatgccggtgcacggcgaatggcggcacctgcgggccaacggcgagctggcggtg
cgcacgggcgtggcaccggagaacgtggtgctcgcggaggacggtgtggtggtggacctg
gtcgacggccgggcccgcaccaccggccgcgtcgaggtcgggcacgtctacgtcgacggg
ctgtccgtcggcgatgtcggcgagtcgacattgtccgaccggctggtcctcggcgagggc
gggttcatcgcgatcacggtggcggtggactcgaccaccgggcgcgcggtgagcaccccg
acggtgtccggacgcggtttttccgacgaccccaaggccctcgatgcggttgttccactg
gtcgagatggagctttcgcgaaccgaagccgaggggatcaccgagagccaccgcatcgcg
caggcggtgcgacgcgtggtgggccgctgggtcgccgagacctaccggcgccgcccgatg
atcgtccccaccgtcatcccagtgtaa
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