Amycolatopsis cynarae: ORV05_30280
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Entry
ORV05_30280 CDS
T09969
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
acyn
Amycolatopsis cynarae
Pathway
acyn03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
acyn00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
ORV05_30280
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
acyn03021
]
ORV05_30280
03400 DNA repair and recombination proteins [BR:
acyn03400
]
ORV05_30280
Enzymes [BR:
acyn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
ORV05_30280
Transcription machinery [BR:
acyn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
ORV05_30280
DNA repair and recombination proteins [BR:
acyn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
ORV05_30280
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
WAL65159
LinkDB
All DBs
Position
complement(6288416..6292327)
Genome browser
AA seq
1303 aa
AA seq
DB search
MLDVNYFDELRIGLATADDIRQWSFGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKIIYFAAYVITGVNTELRHNDLPTLENEIGVERKNIEAKRDADIEARAQKLEAD
LAQLEAEGAKSDVRRKVKEGGEREMRQLRDRAQRELDRLDEIWTTFSKLEVRQLIADEQL
YRELYDRYGEYFTGGMGAEAIQKLATEFDVAAEAENLREIIRSGKGQKKLRALKRLKVVA
AFQATGNDPRGMVLDAVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
RVDYSGRSVIIVGPQLKLHQCGLPKDMALELFKPFVMKRLVDLNHAQNIKSAKRMVERAR
PQVWDVLEEVITGHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSANNILSPASGRPLAMPRLDMVTGLFHLTRLDESATGAGH
AYASPAEAIMAYDRKALSLHAPIKIRVTDRQPNRVDAVKLAENGWEPGQPWLAETTLGRV
LFNELLPPDYPFVNEPMPKKRQAAIVNDLAERYSMTQVAQTLDRLKDAGFYWATRSGVTV
SISDVVVPPEKKEILDRYEAKADQVEKRYQRGQLSHAERNNELVKVWSQATDDVAKVMED
AFPEDNPISMIVKSGAAGNMTQVRSLAGMRGLVSNPKGEYIPRPIKANFREGLSVAEYFI
ATHGARKGLADTALRTADSGYLTRRLVDVSQDVIVRETDCGTSRGINMPIGENLGDGRVV
RAQHVETAAYARTLATDAVDAEGNVVLNAGDDLGDPAIEKLITSGITKVKVRSVLTCESV
VGVCAMCYGRSMATGKLVDVGEAVGIVAAQSIGEPGTQLTMRTFHQGGVAGDDITTGLPR
VTELFEARVPKGKAPIADVDGRVRIEESERFWKITLIPDDGGEEIIFDKLSKRQRLANTP
TGPLQDGDHVSVGQLLLEGTPDPHEVLRVMGPREAQMHLVDEVQKVYRAQGVSIHDKHIE
VIVRQMLRRVTIIDSGSTDFLPGELPERTKFESTNRAAVAEGGEPASGRPVLMGITKASL
TTDSWLSAASFQETTRVLTDAAINGRSDKLVGLKENVIIGKLIPAGTGINRYRNIQVQPT
EEARVAAYAIPSYDDGYYTPDVFGTGTGAAVPLDDYDFGRDFR
NT seq
3912 nt
NT seq
+upstream
nt +downstream
nt
gtgctggacgtcaactacttcgatgagctccggatcggcctggccaccgcggacgacatc
cgtcagtggtccttcggcgaggtgaagaagccggagaccatcaactaccgcacgctcaag
cccgagaaggacggcctcttctgcgagaagatcttcggccccacccgggactgggagtgc
tactgcggtaagtacaagcgggtccgcttcaagggcatcatctgtgagcgctgcggtgtc
gaggtgacccgggccaaggtgcggcgcgagcggatgggccacatcgagctggccgctccg
gtcacccacatctggtacttcaagggcgttccctcgcggctgggttacctgctcgacctg
gctccgaaggacctcgagaagatcatctacttcgcagcctacgtgatcaccggcgtgaac
acggagctgcgccacaacgacctgccgacgctggagaacgagatcggcgtcgagcgcaag
aacatcgaggccaagcgcgacgccgacatcgaggcgcgggcgcagaagctcgaagccgac
ctcgctcagctggaggccgagggcgccaagtccgacgtgcgccgcaaggtcaaggagggc
ggcgagcgggagatgcgccagctccgcgaccgggcccagcgcgagctggaccggctcgac
gagatctggaccaccttcagcaagctcgaggtgcgtcagctgatcgcggacgagcagctc
taccgcgagctgtacgaccgctacggcgagtacttcaccggcggcatgggcgcggaggcc
atccagaagctggccaccgagttcgacgtggcggccgaggcggagaacctgcgcgagatc
atccgcagcggcaaggggcagaagaagctgcgcgccctcaagcggctcaaggtcgtcgcg
gccttccaggccaccggcaacgacccgcgtggcatggtgctcgacgccgttccggtgatc
ccgccggacctgcgcccgatggtgcagctcgacggtggccggttcgccacctccgacctg
aacgacctgtaccgccgggtgatcaaccggaacaaccggttgaagcggctgatcgacctc
ggtgcgcccgagatcatcgtgaacaacgagaagcggatgctgcaggaggccgtcgacgcg
ctgttcgacaacggccgccgcggccgcccggtcaccggtcccggtaaccgtccgctgaag
tcgctgtccgacctgctcaagggcaagcagggccggttccgccagaacctgctcggcaag
cgtgtcgactactcgggccgttcggtcatcatcgtcggtccgcagctgaagctgcaccag
tgcggtctgcccaaggacatggcgctggagctgttcaagccgttcgtgatgaagcggctg
gtcgacctcaaccacgcgcagaacatcaagtccgccaagcggatggtggagcgggcgcgc
ccgcaggtgtgggacgtgctggaagaggtcatcaccggccacccggtgctgctgaaccgg
gcgccgaccctgcaccgcctcggtatccaggccttcgaaccgcagctggtggaaggcaag
gccatccagctgcacccgctggtctgtgaggcgttcaacgcggacttcgacggtgaccag
atggcggtgcacctgccgctgtcggccgaggcccaggccgaggcccggatcctgatgctg
tcggcgaacaacatcctgtcgccggcatcgggccgcccgctggccatgccgcgtctggac
atggtcaccggcctgttccacctgaccaggctggacgagagcgccaccggggccggccac
gcctacgcctcgcccgccgaggcgatcatggcctacgaccgcaaggcgctgagcctgcac
gccccgatcaagatccgcgtcacggaccgtcagccgaaccgggtggacgccgtgaagctg
gccgagaacggctgggagcccggtcagccgtggctggccgagacgaccctcggccgggtg
ctgttcaacgagctgctcccgccggactacccgttcgtgaacgagccgatgccgaagaag
cggcaggccgcgatcgtgaacgacctggccgagcggtactcgatgacgcaggtcgcgcag
accctggaccggctcaaggacgccggcttctactgggcgacgcgctccggtgtgaccgtg
tcgatcagcgacgtggtcgtgccgccggagaagaaggagatcctcgaccggtacgaggcc
aaggccgaccaggtggagaagcgctaccagcgcggtcagctctcgcacgccgagcgcaac
aacgagctggtcaaggtgtggagccaggcgaccgacgacgtcgccaaggtcatggaggac
gccttcccggaggacaacccgatctcgatgatcgtgaagtccggggcggcgggcaacatg
acccaggtccgttcgctggccggtatgcgtggtctggtgtcgaacccgaagggtgagtac
atcccgcgcccgatcaaggcgaacttccgtgagggcctgtcggtggccgagtacttcatc
gccacccacggtgcccggaagggtctggccgacaccgcgctccgtaccgccgactcgggt
tacctgacccgtcgtctggtggacgtgtcgcaggacgtcatcgtccgcgagaccgactgt
ggcaccagccgcggcatcaacatgccgatcggtgagaacctgggtgacggtcgcgtggtg
cgggcgcagcacgtggagaccgccgcctacgcccggacgctggccaccgacgcggtggac
gccgagggcaacgtggtgctcaacgccggagacgacctcggcgaccccgcgatcgagaag
ctgatcaccagcgggatcaccaaggtcaaggtgcgcagcgtgctcacctgcgagtccgtt
gtcggtgtctgcgcgatgtgctacggccgctcgatggcgaccggcaagctggtggacgtc
ggcgaggccgtcggtatcgtcgccgcccagtcgatcggtgagccgggtacccagctgacg
atgcgtaccttccaccagggtggtgtcgccggtgacgacatcaccacgggtctgccgcgt
gtcaccgaactgttcgaggcccgggtcccgaagggcaaggcgccgatcgccgacgtcgat
ggccgcgtgcgcatcgaggagagcgagcggttctggaagatcacgctgatcccggacgac
ggtggcgaggagatcatcttcgacaagctgtcgaagcgtcagcgcctggccaacacgccg
accggcccgctgcaggacggcgaccacgtgtccgtcggccagctgctgctggaaggcacc
ccggacccgcacgaggtgctgcgcgtcatgggtccgcgcgaggcgcagatgcacctggtg
gacgaggtccagaaggtgtaccgggcgcagggtgtgtcgatccacgacaagcacatcgag
gtgatcgtccggcagatgctgcgccgggtcacgatcatcgactcgggttcgaccgacttc
ctgcctggtgagctgcccgagcgcaccaagttcgagtcgacgaaccgggccgcggtggcc
gagggcggcgagcccgcttcgggccgcccggtgctgatgggtatcacgaaggcctcgctg
accacggactcgtggctgtccgcggcgtcgttccaggagaccacgcgtgtcctgaccgac
gcggcgatcaacggccgcagcgacaagctggtcggcctgaaggagaacgtgatcatcggt
aagttgatcccggccggcacgggtatcaaccggtaccgcaacatccaggtgcagccgacc
gaggaggccagggtggcggcgtacgccatcccgtcctacgacgacggctactacaccccg
gacgtgttcggcaccggcaccggcgccgcggttccgctggacgactacgacttcggccgc
gacttccgctga
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integrated database retrieval system
