Acidithiobacillus caldus ATCC 51756: Acaty_c1200
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Entry
Acaty_c1200 CDS
T03561
Name
(GenBank) Ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
acz
Acidithiobacillus caldus ATCC 51756
Pathway
acz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
acz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Acaty_c1200
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acz03019
]
Acaty_c1200
03009 Ribosome biogenesis [BR:
acz03009
]
Acaty_c1200
Enzymes [BR:
acz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Acaty_c1200
Messenger RNA biogenesis [BR:
acz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Acaty_c1200
Ribosome biogenesis [BR:
acz03009
]
Prokaryotic type
rRNA processing factors
Acaty_c1200
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DUF4901
Motif
Other DBs
NCBI-ProteinID:
AIA55068
UniProt:
A0A059ZUC2
LinkDB
All DBs
Position
complement(1205026..1207137)
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AA seq
703 aa
AA seq
DB search
MLINATHPEELRVALVDGQKLLDLDIEHTFREQKKSNVYKGRITRIEPSLEAAFVDYGAE
RHGFLPLKEISREYFSQPEQPGRKRIQDLVREGQEVIVQVDKEERSSKGAALTTFVSLAG
RYLVLMPNNPRAGGVSRRIEGEDRTQIRQHLQMLDIPDNMGVIARTAGIGQDFEALQRDL
EYLKQIWQAIVEAAEKAPAPFLIYQEGNVVVRALRDHFSEDIGEVLIDDESAFQAAQQFM
TAMMPKVLNRLKLYDNDIPLFSRYQIEQQIESAFSREVRLESGGAIVIDHTEALVAIDVN
SGKSTKGQDIAETAFQTNLEAAEEVARQIRLRDLGGLIVVDLIDMESPKHQREVESRLKE
ALKLDRARVQVGRISRFGLLEMSRQRLGASLEEASYEPCPRCSGTGQIRGCEGTALHVLR
LLHEEALKAGAAEVECKVPVDVAVYLLNEKRLPLLELEAKSNTRITIIPDPALLTPHYEI
QRVKAEATPAHNERTNSSRNLRDLPNRPARAQNGAAQAALNPLTAPPPPSVLPPPKTLPQ
SPQQRDKSASKTATPPSEGILARFVRALVSRYEPVDSQTFLTRALGEEAIPPAAEPVSGD
VETKASGDTETPSGRSRRRRRGGRRARARRQSGQDERPHDGNDEADAAPPTTAMDLEVAP
PGREVRRPKEALEWSDPASSPEPPADEALRYPATRIPRADDWH
NT seq
2112 nt
NT seq
+upstream
nt +downstream
nt
atgctgatcaatgccacccatcctgaggagttgcgggtggccctcgtcgatggtcaaaaa
ctcctcgatctcgatatcgaacacaccttcagggaacagaaaaagagcaacgtctataaa
gggcgtatcacccgcatcgagcccagcctcgaagccgccttcgtcgactacggggccgag
cgccacggcttccttcccctcaaggagatctcccgggaatacttcagtcaacccgagcag
ccaggacgcaagcgtatccaggacctggtgcgcgagggacaagaggtcatcgtgcaggtg
gacaaggaagagcgctccagcaagggtgccgccctgaccaccttcgtcagcctggcgggg
cgctacctcgtgctcatgcccaacaatccgcgcgccggcggggtttcccgtcgcatcgag
ggcgaagaccgcacccagatccgccagcacctgcagatgctggatattccggacaacatg
ggggtcatcgcccgcaccgccggtatcggccaggatttcgaggccctgcagcgggatctc
gagtacctcaagcaaatctggcaagccatcgtcgaggcggcggagaaagcgcctgcgccc
ttcctcatctatcaggaaggcaacgtcgtggtgcgcgccctgcgcgatcatttctccgag
gacatcggcgaggtgctcatcgacgacgagagtgccttccaggcggcccagcagttcatg
acggccatgatgcccaaggtgctgaatcggctgaagctctacgacaacgacatccccctc
ttcagccgctaccagatcgagcagcagatcgagtcggccttcagccgcgaggtgcgtctg
gagtcgggcggtgccatcgtcatcgaccacaccgaggccctcgttgccatcgacgtcaac
tccggcaaatccaccaagggccaggacattgccgagacggccttccagaccaatctcgag
gcggcggaggaagtcgcccggcaaatccgcctgcgcgatctgggcggtctcatcgtcgtc
gatctcatcgacatggaatcgcccaagcatcagcgcgaggtggaatcgcgtctgaaggag
gccctcaagctggaccgcgcccgggtgcaggtggggcgcatctcccgtttcggtctgctg
gaaatgtcgcgccaaaggctcggcgcgagtctggaggaggcctcctacgaaccctgcccc
cgttgcagtggcacgggccagatccgtggctgcgaagggacggctctgcacgtgctgcgc
ctgttgcacgaggaagcgctcaaggccggggcggcagaggtggagtgcaaggtgcccgtg
gacgtggccgtctatctcctgaatgaaaaacggctcccgctgctggagctggaggccaag
agcaacacccgcatcactataattcccgatcccgccctcctcaccccgcactacgagatc
cagcgggtcaaggcggaagcgacgccggcccacaacgaacggaccaacagcagccgcaac
ctgcgcgacctgcccaaccgcccggcccgagcccagaacggggcggcccaggcggcgctc
aatcctctgacggcaccgccaccacccagcgtgttgccgcctccaaaaacgctgccccaa
agcccacagcagcgggacaaatccgcatccaagacggcgacgccccccagcgagggcatc
cttgctcgtttcgttcgggccctggtgtcgcgctacgaacccgtggattcccagaccttc
cttacccgcgccctgggcgaggaggccatcccccctgctgccgaacccgtgagcggcgac
gtggagaccaaagcttctggggatacggaaactccatccggacgcagtcggcgcagacgc
cgaggtggtcggcgggcacgggcgcggcgccagagtgggcaggacgagcgtccccatgac
ggcaacgacgaggccgatgcagcgcccccgaccacggcaatggatttggaagtcgctccg
ccggggagagaggtacgccgcccgaaggaagccttggaatggagtgaccccgcatcgagc
ccggagcctcccgccgacgaagccctgcgctaccccgcgacccggattcctcgcgccgac
gactggcactag
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