Alistipes dispar: A5CPEGH6_08000
Help
Entry
A5CPEGH6_08000 CDS
T06629
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ada
Alistipes dispar
Pathway
ada03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ada00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
A5CPEGH6_08000 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ada03021
]
A5CPEGH6_08000 (rpoC)
03400 DNA repair and recombination proteins [BR:
ada03400
]
A5CPEGH6_08000 (rpoC)
Enzymes [BR:
ada01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
A5CPEGH6_08000 (rpoC)
Transcription machinery [BR:
ada03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
A5CPEGH6_08000 (rpoC)
DNA repair and recombination proteins [BR:
ada03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
A5CPEGH6_08000 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Biotin_lipoyl_2
Motif
Other DBs
NCBI-ProteinID:
BBL06162
UniProt:
A0A4Y1WZJ1
LinkDB
All DBs
Position
complement(912912..917171)
Genome browser
AA seq
1419 aa
AA seq
DB search
MSITKDNKPNNGYSRISIGLASPEEILAQSSGEVLKPETINYRTYKPERDGLFCERIFGP
VKDYECHCGKYKRIRYKGIVCDRCGVEVTEKKVRRERMGHISLVVPVVHIWYFRSLPSKI
GYLLGIPSKKLEAIIYYERYVVINAGAASEQGIERLQTLSEKEYLDVVAALPKGNQALDD
ADPNKFVAQMGAEAIYTLLKQVDLDSMSYALRHKASTETSQQRKSEALKCLNVIESFRAS
EGKNKPEWMVLSVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLIEIKAP
EVILRNEKRMLQEAVDSLFDNSRKSNAVKNESNRPLKSLSDSLKGKQGRFRQNLLGKRVD
YSARSVIVVGPELKMHEMGIPKDMAAELYKPFVIRKLIERGIVKTVKSAKKIIDRKDPVI
WGILENVIKGHPVLMNRAPTLHRLGIQAFQPKLIEGKAMQLHPLACTAFNADFDGDQMAV
HLPLGNAAILEAQLLMLGSHNVLNPANGAPITVPSQDMVLGLYYITKPRKGVKGEGHTFY
GPEEAIIAYNEKRADLHAIVKCLVDDLDEEGNPVRVLKETTIGRILFNQVVPREVGYINE
VLTKRSLRDIIAVVMKKAGADKVAAFLDDIKNMGYRMAFQGGLSFNLDAVIIPDEKEKLV
QEGYERADAIMDDYNMGLITNNERYNQIIDVWTNINTKLTKAVIDTLIKDDDGFNPVYMM
LDSGARGSKEQIRQLSGMRGLMAKPQKSGVEGGQQVIENPILSNFKEGLSVLEYFISTHG
ARKGLADTALKTADAGYLTRRLVDVAQDVIINEEDCGTLRGLTATAIKRNDDVVQTLYDR
ILGRVALNDVIHPLTGEVLCKAGEEITESIAEAIEKSPLESVEIRSVLTCEARHGVCAKC
YGRNLATARMVQKGEVVGVIAAQSIGEPGTQLTLRTFHVGGVAGGTAVETNVVSKYEGRL
EIDELRTVKGKNAAGEAIDIVISRQSEFRIVDPKTGIVLYTHNLPYGATLFMEDGAEVRK
GDLVCEWDPYNAVIISEYEGRVAYENIIEGVTYRDERDEQTGLSEKVVIESKDKTKNPVI
KIQNKEGEEVKQYNLPVSAHIVVKDNARIKAGDILIKIPRAVGKSGGDITGGLPRVTELF
EARNPSNPAIVSEIDGEVTFGKIKRGNREIIITSKQGDVKRYLVPLSRQIIVQENDYVKA
GDPLSDGAITPSDILNILGPTRVQEYIVNEVQEVYRMQGVKINDKHFEVIVRQMMSKVKI
EDPGDTRFFEDQIVDKWEFMDVNDELYDKVVVTDAGDSTVLQPGQIVSLRKLRDENSSLK
RRDLRPVQVRDIVPATSTQVLQGITRAALQTSSFISAASFQETTKVLNEAAIQAKVDPLE
NLKENVICGHLIPGGTGLREYDDLVVAAKTELETLQQAQ
NT seq
4260 nt
NT seq
+upstream
nt +downstream
nt
atgtcaattaccaaagacaataaaccgaacaatggttacagccgcatttcgatcggcctg
gcctctcccgaggagattctggcccagtcgagcggcgaggtgctgaagcctgagaccatt
aactaccgcacctacaagcccgagcgcgacggtctgttctgcgagcgcatcttcggtccg
gtgaaggactacgagtgccattgcggcaagtacaagcgcatccgctacaagggcatcgtc
tgcgaccgctgcggcgtggaggtgaccgagaagaaggtgcgccgcgagcgcatgggccac
atctcgctggtcgtgccggtggtgcacatctggtattttcggtcgcttccctcgaagatc
ggttatctgctgggcattccgtcgaagaagctcgaggcgatcatctactacgagcgttac
gtcgtcatcaatgccggcgcggcctcggagcagggcatcgagcggttgcagaccctctcg
gagaaggagtacctcgacgtcgtggccgcgctgccgaagggcaaccaggcgctcgacgat
gcggaccccaacaagttcgtcgcccagatgggcgccgaggcgatctacacgctgctcaag
caggtggacctcgactcgatgtcctatgcgctgcgccacaaggcttcgaccgagacctcg
cagcagcgtaagtccgaggcgctgaagtgcctgaacgtcatcgagtcgttccgtgcttcg
gagggcaagaacaagcccgagtggatggtgctgagcgtgattccggtgattccgcccgag
ctgcgtccgctggttccgctcgacggcggccgtttcgccacgtcggacctgaacgacctc
taccgccgcgtcatcatccgcaacaaccgtctgaagcgtctgatcgagatcaaggctccg
gaggtgattctgcgcaacgagaagcgcatgttgcaggaggccgtcgattcgctcttcgac
aactcgcgcaagtcgaacgccgtgaagaacgagtcgaaccgtcccctgaagtcgctctcc
gattcgctcaagggcaagcagggccgtttccgccagaacctgctcggtaagcgcgtggac
tactcggcccgttcggtgatcgtcgtgggtcccgagctgaagatgcacgagatgggtatt
ccgaaggatatggccgccgaactttacaagccgttcgtgatccgcaagctcatcgagcgc
ggcatcgtcaagacggtgaagtcggccaagaagatcatcgaccgcaaggaccccgtgatc
tggggcattctggagaatgtcatcaagggccaccccgtgctgatgaaccgtgccccgacg
ctgcaccgtctcggtatccaggcgttccagcccaaactgatcgagggcaaggccatgcag
ctgcatccgctggcctgtacggccttcaacgccgacttcgacggcgaccagatggccgtg
cacctgccgctgggcaacgccgccattctggaggcgcagttgctcatgctcggttcgcac
aacgtcctcaaccccgccaacggcgctccgatcaccgtgccttcgcaggacatggtcctc
ggactgtactatatcaccaagccccgcaagggcgtgaagggcgaaggccacacgttctac
ggtcccgaggaggcgatcatcgcctacaacgagaagcgtgccgacctgcacgccatcgtg
aagtgtctggtggacgatttggacgaggagggcaatcccgtgcgcgtcctgaaggagacg
accatcggccgcatcctcttcaaccaggtggttccccgggaggtgggttatatcaacgag
gtgctgacgaagcgttcgctgcgcgacatcatcgccgtggtgatgaagaaggcaggagcc
gacaaggtggccgccttcctcgacgatatcaagaacatgggttaccgcatggcattccag
ggcggtctgtcgttcaacctcgacgccgtgatcattcccgacgagaaggagaaactcgtg
caggagggctacgagcgcgccgatgcgatcatggacgactacaacatgggtcttatcacc
aacaacgagcgttataaccagatcatcgacgtctggaccaatatcaatacgaagctgacg
aaggccgtgatcgacacgctgatcaaggacgacgacggcttcaacccggtgtacatgatg
ctcgactccggagcccgcggctcgaaggagcagatccgtcagctgagcggtatgcgaggt
ctgatggccaagccgcagaagtcgggcgtcgagggcggtcagcaggtgatcgagaacccg
attctctcgaacttcaaggagggactttcggtgctcgagtacttcatctcgacgcacggc
gcccgcaagggtcttgccgacaccgccctgaagacggccgacgccggttacctgacgcgc
cgtctggtggacgtggcgcaggacgtcatcatcaacgaggaggactgcggcacgctgcgc
ggcctgacggctacggccatcaagcgcaacgacgatgtcgtgcagacgctctacgaccgc
atcctgggccgcgtcgcgctgaacgacgtgatccacccgctgacgggcgaggtgctctgc
aaggccggcgaggagatcaccgagtcgatcgccgaggccatcgagaagtcgccgctggag
tccgtcgagatccgttcggtgctgacctgcgaggcgcgccacggcgtctgcgcgaagtgc
tacggccgcaacctggccacggcgcgcatggtgcagaagggcgaggtggtcggcgtgatc
gccgcgcagtccatcggcgagccgggtacgcagttgacgctccgtacgttccacgtcggc
ggcgtggccggcggcacggccgtcgaaacgaatgtcgtatcgaagtacgaaggccgcctg
gagatcgacgaactccgcaccgtgaagggcaagaacgccgccggcgaggcgatcgacatc
gtcatttcgcgccagtcggagttccgcatcgtcgatcccaagaccggcatcgtgctctac
acgcacaacctgccttacggcgcgacgctcttcatggaggacggcgccgaagtgaggaag
ggcgacctcgtctgcgaatgggatccctacaacgccgtgatcatctcggagtacgagggc
cgcgtcgcctacgagaacatcatcgagggtgtgacctaccgcgacgagcgcgacgagcag
acgggactttcggagaaggtggtgatcgagtcgaaggacaagaccaagaaccccgtcatc
aagattcagaacaaggagggcgaagaggtcaagcagtacaacctgcccgtttcggcccat
atcgtggtgaaggacaacgcccggatcaaggccggcgacatcctcatcaagattccgcgc
gccgtcggcaagtcgggcggcgacatcaccggcggtctgccgcgcgttacggagctattc
gaggcccgcaacccgtcgaatccggccatcgtctcggagatcgacggcgaggtgacgttc
ggcaagatcaagcgcggcaaccgcgagatcatcatcacctcgaagcagggcgacgtgaag
cgttacctcgtgcccctgtcgcgtcagatcatcgtgcaggagaacgactacgtgaaggcc
ggcgacccgctgtcggacggagccatcacgccttcggacatcctcaacatcctcggcccg
acgcgcgttcaggagtatatcgtgaacgaggtgcaggaggtgtaccgtatgcagggcgtg
aagatcaacgacaagcatttcgaggtgatcgtgcgccagatgatgtcgaaggtgaagatc
gaggatccgggggacacccgtttcttcgaggatcagatcgtggacaagtgggagttcatg
gacgtgaacgacgagctttacgacaaggtcgtcgtgacggatgccggcgactcgaccgtg
ttgcagcccggacagatcgtttcgctgcgcaagctgcgcgacgagaattcgagcctcaag
cgccgtgatctgcggcccgtacaggtgcgcgatatcgttcccgcgacttcgacgcaggtc
ctgcagggtatcacccgtgcggctttgcagacctcgagcttcatttcggcggcttcgttc
caggagacgaccaaggtgctcaacgaggcggccatccaggccaaggtcgatccgctggag
aacctcaaggagaacgtgatctgcggtcacctgatccccggcggtacgggtctgcgcgaa
tacgacgatctggtcgtcgctgcgaagaccgagctggaaacgctccagcaggcgcagtag
DBGET
integrated database retrieval system
